rps15 (rps15,abhd8,LOC107685215,LOC107578086)


Basic Information

Item Value
gene id rps15
gene name rps15,abhd8,LOC107685215,LOC107578086
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19695227 ~ 19700274 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218602
ttttttttctttagcgcGAGCCAACGCCGAGTACTTCCTTTTCCGGTTTCTCTCTCAAGATGGCGGACGCAGAGCAGAAGAAGAAGCGTACCTTCAGGAAGTTCACCTACAGAGGTGTGGACCTGGACCAGCTCCTGGACATGTCCTAtgAGCAGCTCATGCAGCTGTATGGTGCTCGCCAGAGGAGGAGGTTGAACCGTGGCCTGAGGAGGAAGCAGCAGTCTCTCCTTAAACGCCTGCGCAAGGCCAAGAAGGAGGCGCCTCCTATGGAAAAGCCTGAGGTGGTGAAGACCCATCTGCGGGACATGGTCATCCTGCCTGAGATGGTAGGCTCCATGGTCGGCGTGTACAACGGCAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATTGGTCACTACCTTGGAGAGTTCTCCATTACATACAAGCCTGTCAAGCACGGTCGCCCTGGTATTGGAGCCACCCACTCCTCCCGCTTCATTCCTCTGAAGTAAACCATAATTGATGTAAATAAAAGTGACTTCCAACACATGGACTTTGTCTCATTCTTAAGAAAAGACTTTCAGAATGTAATTTTCTGCCTAACTTAAGCACAGTGGATTTACAAAAGCCATTGGACAAGTGCATAGTTTATAATGGATTTTGTATGTTTTCTCATTTAGTAAgtaacattgtttatatatcAAATTTCCCAGGTTTTTGGTTCCTTCATAAACAGGTTGATGGATTTATAACTAGAACAAACTAAAACAATTTTCAACTGCaagtttaaaaacttttaatcgagagggagagaaaaaactaATATGCACATTCAGTGCTTTACTATGCTACATTTTGTTAAACAATGGTTTGCTTAAAGCTCTTGGACATGCAAAATGTACTGTTGGCCCATTTTTGGTGAAAAAATGACCAGatgaattcagaaatgtcaTTACACAAGAGAAAATGGCACAGACATGCTTACACTTTAGagctctcaaaaaaaaaaaaaaaaaaaaaaagaatattggaAACACTTCATGTCCCACTTAGATGGTTGGTATTTGCTTATTAAAACGGGAAGACTCATTTTATATTGCAGTAATACTTGCTAAGTTTTGGTCTCTAGCAGAACATAAGTATTCATAAAATGACATGTTTAGTCCACAATACATAAAAAGGCAGTATGAAGAAAACATCTTCAGTAgctgatttatcctggtcagggtcctggcaatccagagcctatcctgggaatacacCTTGAATGGGATGCCCATCCATCACTGGGCACATTGCACACATTGATGCACTCATTTGCTCCTAGGCCAGTTGAGAATAACCTCAGTACTTGCAGTGGCAGTGCAGAACCAGAGGGAGGTAATGTAGAGTCAGCAGTATCTTTCACAGTCTGTGTCTCAgttggaatctttaaatgcatttttttctttttaacatgcAGAGTAGTCAGGTTTAGATTGTTATAAAGATTTGTGATTGAGATATGTGCAAATTAGACtaatttcagttcagaaaagcctgttttcagaactatatagtGGAAAATATGTCCTTTCTCCGCACTATTTAGCTATATAGCTGTTATATGATCTCTTAGACTGACAAATCTGCTAGATCTGTCTTAATAGTCTATTTCTGTTGTATAATTATGCACATTTTGTAGTCTTTGGGAGAGTTATTGGCCTTATTGAGTCTTGCTCTAGGCTTGCAGTCTTGGGTGCAGTTGTAAGCCTTGCTGTTTCTTTGGAGGCGCTCGTTTTGCTACTGTTTGGTGGAAGTGCTGTTTCTTGTTTGGCTTTGGAGGCAGTGGCTGGCTGCCAAAGGAAAAATTCATGCAACAAAGTATTGACTGTATCAGGGCACTCCATCATCACCATGTGGCTTCCCTCTTCGATGACTTTCAGGAAACCCAGAAGTAGTATCTGTCCAGACATGGAGTGTAATTACACTgttatgactgtttataacttaTATATACCATAGTTTGTTGGAGTGCAGTAATGTTCTGGATCTACTAAATTAACTGGAACtactaaatttaaaatgatcacAGATTAACAGTCAGCACTAAAATGTTTACCTCTGCCATGCGCTGGTCCTCTTGTATTGGCACAAACCTGTCGTACATGCCATGTACCAGGAGGGTTGGCACGGTGAGTTCAGCATGGTACACCTCATCACCCTCTGGCCAGTACTGCCCATTCATCGTCGACCGCAGAACAAAAGATGATACGTTGAAggcatttttctctttcagaagtTTCTTTTCCTTCAGGCCCTGATGAGCAAAACCAGCCCTAGAGAAACAAACCATTATTCCTGGGAATCATAGTAGGAATGATGACATGCTTGTGGTTACTATAACAAACAGGAATTGCTGAGAAAAAtggcttttttaaataatcttacATTAGGAAGCTCCATGATAGGCACGGCGACAAGCAGTGGAGTACACATGTTGGCAGATTGAAGACTGAACAGAGGCTTGGTTCCAGGGCTGTAGGCCCACCACCATTAATCATCACCACTTTGTGAACTTGATCTGGATACTCATGGGCCAGAAAGGTGCAGAAAGACACACTAAAGGGAAAGGGGAAAGACATCGCTTTCCAGTACTAATGTTAAAAACAAGACTGAATGAATAAGACAGTGCAGAAAGAATCAGCCCCTTACCCATATGAATGCCCAATGAGAATGTTTCGTCGTTTTGCATATCTCATGAATATGATTCTTATATCATCAGCAAGGGCGTAAAATGTGTAGGCAGCTGTGATTTGAGGTGCAGAGCTGGCTCCATGGCCAGCTAGGTCTGGTGCTATCACCTCATAACCGAGCTGAGAGAAATAGTCCAGCTGGTTCTCCCAAATATCCAAAGAGCCTCCTACTCCATGAATGAAGAACAAGGCCACATCAGGGTGTGTCTCTTTGCACCGGGTGATCTGGCGTTCACAGTCGATCATCACGGTACGCTTGGGCTTGCACCATCTGCGCTGTGGCTGCTCATGTGCTACTGCCATGCTGGACTCTACAACCTGTCCTGAGGCTGTGTTGTTACTGTCCAGAACATCCACCTCCACAGCGCTCTCTCCGTTTTGG
>XM_026930531.2
GACGTCacaccaaacatttttttttctttagcgcGAGCCAACGCCGAGTACTTCCTTTTCCGGTTTCTCTCTCAAGATGGCGGACGCAGAGCAGAAGAAGAAGCGTACCTTCAGGAAGTTCACCTACAGAGGTGTGGACCTGGACCAGCTCCTGGACATGTCCTAtgAGCAGCTCATGCAGCTGTATGGTGCTCGCCAGAGGAGGAGGTTGAACCGTGGCCTGAGGAGGAAGCAGCAGTCTCTCCTTAAACGCCTGCGCAAGGCCAAGAAGGAGGCGCCTCCTATGGAAAAGCCTGAGGTGGTGAAGACCCATCTGCGGGACATGGTCATCCTGCCTGAGATGGTAGGCTCCATGGTCGGCGTGTACAACGGCAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATTGGTCACTACCTTGGAGAGTTCTCCATTACATACAAGCCTGTCAAGCACGGTCGCCCTGGTATTGGAGCCACCCACTCCTCCCGCTTCATTCCTCTGAAGTAAACCATAATTGATGTAAATAAAAGTGACTTCCAACACA

Function

symbol description
rps15 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS15 (ribosomal protein S15).
abhd8 Predicted to enable carboxylic ester hydrolase activity and lysophosphatidic acid acyltransferase activity. Predicted to be involved in lipid homeostasis and phosphatidic acid biosynthetic process. Located in extracellular exosome.

NR:

description
PREDICTED: 40S ribosomal protein S15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218602 True 3102 TUCP 0.43 4 19695244 19700274
XM_026930531.2 False 551 mRNA 0.52 4 19695227 19697706

Neighbor

gene id symbol gene type direction distance location
dazap1 dazap1,LOC107685225 coding upstream 3447 19676216 ~ 19691780 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding upstream 35807 19652838 ~ 19659420 (+)
ctdspl3 LOC108270532,LOC108435930,LOC107597167,LOC107757917,LOC107685268 coding upstream 46311 19642225 ~ 19648916 (+)
arid3a arid3a coding upstream 57036 19607447 ~ 19638191 (+)
LOC113531697 kiss1r coding upstream 89613 19599263 ~ 19605614 (+)
gtpbp3 gtpbp3 coding downstream 46608 19746882 ~ 19764051 (+)
ushbp1 ushbp1 coding downstream 80954 19781228 ~ 19796168 (+)
nr2f6b nr2f6,nr2f6b,LOC107680506,LOC107747262 coding downstream 99382 19799656 ~ 19808358 (+)
pole4 pole4,LOC106613703,LOC107685140 coding downstream 154411 19854685 ~ 19860286 (+)
ctns ctns coding downstream 203884 19904158 ~ 19911209 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 30736 19661092 ~ 19664491 (+)
G184614 NA non-coding upstream 92588 19548663 ~ 19602639 (+)
G184503 NA non-coding upstream 232384 19461824 ~ 19462843 (+)
G184504 NA non-coding upstream 233537 19459818 ~ 19461690 (+)
G184340 NA non-coding upstream 613742 19081252 ~ 19081485 (+)
G184718 NA non-coding downstream 3361 19703635 ~ 19704250 (+)
G184823 NA non-coding downstream 108439 19808713 ~ 19809254 (+)
G184882 NA non-coding downstream 221197 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 254320 19954594 ~ 19955040 (+)
G184988 NA non-coding downstream 564662 20264936 ~ 20265620 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 140258 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 147015 19526877 ~ 19548212 (+)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 207443 19486328 ~ 19487784 (+)
adgrl4 adgrl4,LOC102783218 other upstream 424966 19254931 ~ 19270261 (+)
LOC113526284 naaladl2 other upstream 1286170 18166622 ~ 18409057 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other downstream 127712 19827986 ~ 19834414 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other downstream 135871 19836145 ~ 19845238 (+)
ccl44 LOC108271213 other downstream 165524 19865798 ~ 19871463 (+)
G184979 NA other downstream 449697 20149971 ~ 20150894 (+)
wipf2a LOC108270800 other downstream 1488974 21189248 ~ 21210539 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003186 rps15 coding NC_007122.7 CM002895.2 5926850 ~ 5931622 (+)
grasscarp (Ctenopharyngodon idella) CI01057377_00000865_00001438 RPS15, RS15, RPS15-PS2, RPS15P4, RIG, RPS15.L coding CI01057377 null 844 ~ 1438 (-)
bowfin (Amia calva) AMCG00006076 rps15,rig,LOC107578086,LOC107685215 coding CM030142.1 CM030142.1 15433541 ~ 15436677 (+)