AMCG00006076 (rps15,rig,LOC107578086,LOC107685215)


Basic Information

Item Value
gene id AMCG00006076
gene name rps15,rig,LOC107578086,LOC107685215
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15433541 ~ 15436677 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006076
GGTGGGTGATGTGTTTTTGTACCGATGCTGTATCTTGGAGTATCTTTAACCATCACCCCATAACACCCATGCTCATTGTTCGCATATGGAGGGGTTATGATGGCGAATGTGTCTGGATGGCGGGCAGGGCGGTATTTGTGTGCGATTGGGAGCTTTGAACCGTGTTTCTGCGAGCGCCGATTGTGATGCCCGTCCGGCACGGCGGGGATGTAGCTTCCCGAGGCGTGTTTGAAGCCTGCGGTATTGTCGTCCATGGAGGGATTGACTTAAATGGAAACgCGGACGTTGAGCAAAAGAAGAAGCGCACCTTCAGGAAGTTCACCTACAGAGGCGTGGACCTGGACCAGCTCCTGGACATGTCCTACGAGCAGCTGATGCAGCTGTACTGCGCCCGTCAGCGCCGGAGGCTGAACCGCGGGCTGCGCCGCAAGCAGCAGTCTCTCCTGAAGCGCCTGCGCAAGGCCAAGAAAGAGGCCCCGCCCATGGAGAAGCCCGAGGTGGTGAAGACCCATCTGAGGGACATGGTCATCCTGCCTGAGATGGTGGGCTCCATGGTGGGCGTCTACAACGGCAAGACCTTCAACCAGGTGGAAATCAAGCCTGAGATGATTGGCCACTACCTGGGCGAGTTCTCCATCACGTACAAGCCCGTGAAGCACGGTCGCCCCGGTATTGGAGCCACCCACTCCTCTCGCTTCATCCCTCTGAAGTAAACCTGCTGCAGAGTCTGTctgtaaataaaacagtgatTCTCCACCACGGCTGCCTCTGTCCCTTCTGTGCGTCTGTCCTCAAGCTGGATAAATGGGTGGACGTTCTCATGCTTGTGAGATCTCGGTCGACCTGGATTCAGTTGTGTGCACTGCTCGAGTTTTTCACTTGTAGGTGCTGCATAAATTAATGCCAGGGGAAATTGATTGCAGTGTGCGTCTTGCACAATAGATGGCAGCACAAACTGTTTTAACTGTACCCAGTCCCATGCATCAGTTGTAAATCTATGAAACTGTTTGTTTAGAGTCTCTTGAAGTATCTATCGAATGTCATACATGGTGTAACAATTTAGATATTGCACAGGACAAGCCAAATTAATCTATAGCCATCTTTTAACATCAGTGGTCTGAATACTAGTTGCTTGcatcccatttttatttttcatccttGTACATCTTTTGAATTCTGTCCAGGACTAAACTGATGGGAATTCAGATTGGTGTTCATATCaattttactaaataaacatCTATCTCAAGAATAACA

Function

symbol description
rps15 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS15 (ribosomal protein S15).
rig Involved in flight behavior; molting cycle; and response to ecdysone. Located in cytoplasm and nucleus. Part of SMN complex and cytoplasmic U snRNP body. Is expressed in adult head; nurse cell; and oocyte. Orthologous to human GEMIN5 (gem nuclear organelle associated protein 5).

NR:

description
40S ribosomal protein S15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02958 RP-S15e, RPS15; small subunit ribosomal protein S15e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006076 True 1257 mRNA 0.50 4 15433541 15436677

Neighbor

gene id symbol gene type direction distance location
AMCG00006078 NA coding upstream 3134 15402929 ~ 15430407 (+)
AMCG00006077 ndufs7,LOC107747413,LOC107597168 coding upstream 36444 15392880 ~ 15397097 (+)
AMCG00006049 NA coding upstream 55436 15373975 ~ 15378105 (+)
AMCG00006050 NA coding upstream 61403 15366054 ~ 15372138 (+)
AMCG00006052 NA coding upstream 77436 15328797 ~ 15356105 (+)
AMCG00006066 ddx49 coding downstream 100884 15537561 ~ 15544353 (+)
AMCG00006060 LOC106613630,LOC106573907 coding downstream 166255 15602932 ~ 15603849 (+)
AMCG00006059 NA coding downstream 172022 15608699 ~ 15614431 (+)
AMCG00006061 NA coding downstream 203595 15640272 ~ 15640478 (+)
AMCG00006073 NA coding downstream 289993 15726670 ~ 15745152 (+)
G156042 NA non-coding upstream 1602 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 246316 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 322366 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 324345 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 327138 15105595 ~ 15106403 (+)
G156082 NA non-coding downstream 124926 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 341522 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 396402 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 1027331 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 1068093 16504770 ~ 16505206 (+)
G155932 NA other upstream 325807 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 327974 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 774044 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 1008795 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 1049961 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 141407 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 527756 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 596215 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 617358 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 686451 16123128 ~ 16145238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003186 rps15 coding NC_007122.7 CM002895.2 5926850 ~ 5931622 (+)
striped catfish (Pangasianodon hypophthalmus) rps15 rps15,abhd8,LOC107685215,LOC107578086 misc NC_047605.1 CM018551.1 19695227 ~ 19700274 (+)