AMCG00006073


Basic Information

Item Value
gene id AMCG00006073
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15726670 ~ 15745152 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006073
agTTTTGATGTTGAAAATGGACTGTCTGTGGGCCGCAGCCCCCTGGACCCTCAGGCCAGTCCAGGCTCTGGCCTTGTGCTGCAGGCCAACTTCCCCCACAGCCAGCGACGCGAGTCCTTCCTGTACCGATCCGACAGCGACTTTGACCTCTCGCCCAAGGCCATGTCCAGGAACTCCTCCACTGCCAGTGAGCTACACGGAGAAGACATGATCGTGACACCATTTGCACAGGTGCTGGCCAGTTTGCGGACTGTGAGAAGTAATTTTGCTGCTTTGAACCATCTACAGGATCGTGTGGCCAACAAGAGACCGTCAGGCAGTAACCCGCCTTCGATGTGCAAGCCCAGTCTGCCAGAGGAGACTTACCAGAAGCTGGCCATTGAGACACTGGAGGAACTGGACTGGTGTCTCGACCAGCTGGAGACCCTGCAGACCCGCCATTCCGTCAGCGAGATGGCCTCCAACAAGTTTAAAAGGATGCTGAATCGAGAACTGACCCACCTATCAGAAACCAGCCGGTCTGGAAACCAGGTCTCCGAGTTCATATCAAGCACGTTTCTAGATAAGCAGCACGATGTGGAGATCATGTCTCCCATGCACAAGGACAAGAAGGacaagaaggagaagaaggagaagaaggagaagaaggagaagaagaggcCCATGTGTCAGATCAGTGGGGTGAAGAAACTCACCCACAGCTCCAGTCTGGCCGTCTCCAGCATCCCGCGATTTGGGGTCAACACAGACCAGGAGGGGCCCTTGGCCAAGGCATGGCGCCCATTCATTGTCACTAATTACAGTGAGTTTGAAGAGATCAACAGATGGGGTCTGGATGTTTTTAAGATAGCAGAGTATTCTGGAAACCGGCCCCTAACGGTGATAATGTACTCAGTTTTCCAGGAGAGAGACCTGCTGAAGTCCTTTAAGATCCCAGTGGATACGTTTATCACCTTCATGATGACATTGGAAGATCATTACCATGCTGACGTGGCGTATCACAATAACATCCATGCGGCGGATGTGGTCCAGTCCACTCACGTCCTTCTGTCCACACCTGCACTGGAGGCTGTCTTCACTGATCTAGAAATCTTAGCTGCTCTTTTTGCCAGTGCCATACATGATGTTGATCATCCTGGGGTGTCCAACCAGTTTCTCATCAACACAAACTCGGAGCTGGCGCTGATGTACAATGACTCTTCGGTCCTGGAGAACCATCACCTGGCAGTGGGCTTCAAGCTGCTCCAGGAGGAGAACTGCGACATCTTCCAGAACCTGAGCAAGAAGCAGAGGCAGTCTCTGCGCAAGATGGTCATCGACATGGTATTGGCCACAGACATGTCCAAACATATGAACCTGTTGGCGGATTTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGTTTAGGAGTGCTGCTGCTGGACAACTACTCTGATAGGATCCAGGTTCTTCAGAACATGGTGCACTGTGCAGACCTCAGCAACCCCACCAAGCCCTTGGAGCTGTACCGCCAGTGGACCAAGCGAATCATGGTGGAGTTTTTCACGCAGGGAGACCGGGAGCGGGACAAGGGCATGGAGATCAGCCCCATGTGTGATAAGCACAATGCCTCCATAGAAAAGTCCCAGGTGGGCTTCATTGACTATATTGTCCACCCGCTGTGGGAGACCTGGGCAGATCTGGTGCACCCGGACGCACAGGACATACTGGACACACTTGAGGACAACCGAGAGTGGTACCAGAGCATGATCCCTCACAGCCCCTCGCCGCCCCCCGAGGACAGGGAGAAGGAAGGGGCGGCAGCCGGGGACAAGTTCCAGTTCGAGCTGacgctggaggaggaggaaggggaatCGGATGCTGACAGCCCCCCAGAGGAGGAGTCCCAGGGGGAATCCCGCACTGTCAGTCCCGAGGAACCCAAGCAGGACTCGCCCTGCCCCGGCCAGGAGCCCTCGGACCGTGACGGGGGCAGGACCCTGACGAATGCTGCTGTAAGGAGCCTGGCACACAGGACGTTGCCTGGCGCCAGCACTAACGAGGTGGAGATGGTGGCCGCCAGAGAGGCCAGCGTGGAAGAGAGAGAACTAGACCAAGAAGGGAACGAGACATGCCTCCCTCTCGGCACGTAGCACGACAGACAAGCACTTTCCTATGTTCATTTTCGGttttaattatggttttatttgccCCCTTTGCCTGACTTGCGACGGCGGTCTGAGTGGCAGTGGAAAGCTTAAGAGGGATTCCAGGAAGTCTGTCCGCAGACAACAGTAGCCTTACACTGGAGCTGCCTCTGACAAAAGCCCTTATTGTGTTCTTGTGGGGCTTTTTTCGCACTGTCACGAAGAGCTAGCAATGCAAGAAGaatttaggttttatttaatttgtatttgttttagtttatttccgGGTGGGGGGCACATGAGGCGAaatacttctttttttttcctgtgctttCTGGTTTTTGAAAGCTCCTGGGACACAGACTGCTGTACACGCTGTCACAATAACGTTTCGGCCAACGCTTTGTGCCGTATCTGTGAAAACGGAGAAGGACAGACAAGAGTGGCCATGCTAAAGTatattgagagagaaagagagagagaaaggaattCTACTGAAAAACGTCTTCCTTTGATCGACTGTATATAAAGTTTGtaagaagaaaactaaaataataataacaaagggtCTTGGAACTTTTGTACCAAACAGTGGAAATTAAT

Function

GO: NA

KEGG:

id description
K13293 PDE4; cAMP-specific phosphodiesterase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006073 True 2730 mRNA 0.52 14 15726670 15745152

Neighbor

gene id symbol gene type direction distance location
AMCG00006061 NA coding upstream 86192 15640272 ~ 15640478 (+)
AMCG00006059 NA coding upstream 112239 15608699 ~ 15614431 (+)
AMCG00006060 LOC106613630,LOC106573907 coding upstream 122821 15602932 ~ 15603849 (+)
AMCG00006066 ddx49 coding upstream 182317 15537561 ~ 15544353 (+)
AMCG00006076 rps15,rig,LOC107578086,LOC107685215 coding upstream 289993 15433541 ~ 15436677 (+)
AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding downstream 8076 15753228 ~ 15766640 (+)
AMCG00006106 NA coding downstream 161037 15906189 ~ 15918591 (+)
AMCG00006105 NA coding downstream 179477 15924629 ~ 15926560 (+)
AMCG00006104 klhl26,LOC106613638,LOC106573902 coding downstream 202056 15947208 ~ 15957100 (+)
AMCG00006112 NA coding downstream 302624 16047776 ~ 16049824 (+)
G156082 NA non-coding upstream 120791 15561603 ~ 15605879 (+)
G156042 NA non-coding upstream 294731 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 539445 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 615495 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 617474 15107994 ~ 15109196 (+)
G156130 NA non-coding downstream 33047 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 87927 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 718856 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 759618 16504770 ~ 16505206 (+)
G156321 NA non-coding downstream 854380 16599532 ~ 16599858 (+)
AMCG00006065 lsm4,LOC106613629 other upstream 141909 15578084 ~ 15584761 (+)
G155932 NA other upstream 618936 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 621103 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 1067173 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 1301924 14420382 ~ 14424746 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 219281 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 287740 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 308883 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 377976 16123128 ~ 16145238 (+)
G156327 NA other downstream 882641 16627793 ~ 16629182 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07954612_07959231 PDE4C, PDE4CA coding CI01000004 null 7954236 ~ 7959726 (+)