AMCG00006092 (rps28)


Basic Information

Item Value
gene id AMCG00006092
gene name rps28
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15103456 ~ 15105567 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006092
CCGCAGCCCCACGTgaccctctctctgtctcaagCCGCCATCATGGACGCGAGTCGTGTGCAGCCCATCAAGCTCGCAAGAGTCACCAAGGTTCTTGGAAGGACCGGTTCCCAGGGACAGTGTACGCAGGTGCGTGTCGAGTTCATGGACGACAGCAACCGATCCATCATCCGCAACGTGAAGGGCCCAGTCAGAGAGGGCGATTCCCTTGTGAAGATGGAAGACACGCCCACATTGAAGACCACTGTTGTGGAGTATGGACACTGATTTTTGTAAAGCAGTGTTAAAAGCACGATGTGTACAGTTTGACAATAAAGGTTGGATTGGCAATTAA
>TU196402
GCCTGTGGAAGTATTTCCCGCAtataacacacaataaaataattaaaaataaaaaagaccgCGTTAGATTTTGAGTATAAAAACAGCCCGCAGCCCCACGTgaccctctctctgtctcaagCCGCCATCATGGACGCGAGTCGTGTGCAGCCCATCAAGCTCGCAAGAGTCACCAAGGTTCTTGGAAGGACCGGTTCCCAGGGACAGTGTACGCAGGTGCGTGTCGAGTTCATGGACGACAGCAACCGATCCATCATCCGCAACGTGAAGGGCCCAGTCAGAGAGGGCGATGTGCTCACCCTGCTGGAGTCCGAAAGAGAAGCAAGGAGGCTGCGCTAGGAGTCCCTTGTGAAGATGGAAGACACGCCCACATTGAAGACCACTGTTGTGGAGTATGGACACTGATTTTTGTAAAGCAGTGTTAAAAGCACGATGTGTACAGTTTGACAATAAAGGTTGGATTGGCAATTAATtgtcattgtttatttctgaatatgtatttgGATTTCCATGAAGCTTTATATATGTTCAGTCAATTATAGAGAGGGAG

Function

symbol description
rps28 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane and polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28).

GO:

id name namespace
GO:0006407 rRNA export from nucleus biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006092 False 334 mRNA 0.53 4 15103543 15105489
TU196402 True 550 TUCP 0.47 4 15103456 15105567

Neighbor

gene id symbol gene type direction distance location
AMCG00006093 NA coding upstream 6619 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 61529 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 112098 14990894 ~ 14991358 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding upstream 255318 14838689 ~ 14848138 (+)
AMCG00006041 NA coding upstream 275929 14819668 ~ 14827527 (+)
AMCG00006091 NA coding downstream 43371 15148938 ~ 15156505 (+)
AMCG00006090 NA coding downstream 76397 15181964 ~ 15185213 (+)
AMCG00006070 LOC107661085,LOC108271288 coding downstream 82657 15188224 ~ 15196741 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 99287 15204854 ~ 15215919 (+)
AMCG00006072 NA coding downstream 124398 15229965 ~ 15271081 (+)
G155929 NA non-coding upstream 77 15100320 ~ 15103379 (+)
G155913 NA non-coding upstream 47499 15050855 ~ 15055957 (+)
G155898 NA non-coding upstream 121836 14981101 ~ 14981620 (+)
G155897 NA non-coding upstream 122966 14979305 ~ 14980490 (+)
G155856 NA non-coding upstream 236977 14865914 ~ 14866479 (+)
G155931 NA non-coding downstream 28 15105595 ~ 15106403 (+)
G155933 NA non-coding downstream 2427 15107994 ~ 15109196 (+)
G155934 NA non-coding downstream 4026 15109593 ~ 15111175 (+)
G155974 NA non-coding downstream 80307 15185874 ~ 15187225 (+)
G156042 NA non-coding downstream 324909 15430476 ~ 15431939 (+)
AMCG00006034 vmac,LOC106573562 other upstream 443959 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 678710 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 719876 14375995 ~ 14383580 (+)
G155638 NA other upstream 993586 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 1004760 14097804 ~ 14098696 (+)
G155932 NA other downstream 1642 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 472517 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 858866 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 927325 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 948468 16054035 ~ 16066898 (+)

Expression


Co-expression Network