AMCG00006070 (LOC107661085,LOC108271288)


Basic Information

Item Value
gene id AMCG00006070
gene name LOC107661085,LOC108271288
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15188224 ~ 15196741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006070
GCACCCCGATGGCAGACGCTGAAGAAACCCTCTTGaaagcagaaggtgaggagggaTGCAGCCAAGCCATGGAAGGAGACAAAGGGAGAGGGTTGACCCAGGAAGAAATGACCAGTGAAGGGCTGCCCCTGCTAGCAAGTCCTTTGGCTGAGGCAGAAGAGGAGCCCCACGGCAGTCAAGTGCCAATGCCCCCCCGAGAGTCTGCGAGCCCCTCCCTCGACGAACTGGACTCCTTCAAATTCATTGAGCCCCCTCCCCTGGACTGGCGCTCGGAGTCGTCCAGCGATGTGTGTTCGGTGGCCGAGACGGACGACGGAAGCTTCTTGCCCCCAGACATGGACCCTCCCGAGGATCGCTTGAGTGAGCTGGGCCTACCTCCTGATCCCAGCCCCTGTGGATCCCTGCCCAACCAGGAACAGGACGACTCCACAGGGAGTGAGctggaggaggacgaggaggaggaacaAAGTGGGGAGTACAGGTTGGACGATGAAGACCACACCCAGATCCAGGCCCTTCTTGCCCAGCTGCAGACCTTCAGCAACCGAGGTTCTGTCCCCAGTTCCTCTGAGCCCCATGATAACCTTATGTACGCCATCAGTGGCTCTCTTGGGAGCCCGGGAAGGGGCACCCCAAATTCATCCGACACCAGCCTGCCTGGTTTGAGGCGGCCAGATTCTGGAGGCGCCCACAATTCCATGGGTGCCGGCCTGCTGTTCTCTGAGATGAACCACAGAGACTTGCTGGACCTTCTCGACGGTGAAGTGGAAGAGGGGCAGACAGAGATGGAAGCCCACGCAGGGTACAGGGCAGAAGGGAGGGACGAGGACTCGGTGGTCTCGGTTTCCTACCGAGAGGACGAAGGAGACTGCTTTTGGGACCACTTGGCTAACGGGCAGGGTGGTGCGAGGGATGACACTTTCTCCCCCCAGGACGAGGTCCCAGAGCCAGTTTGGCTGAAAACAGCAGGCGGTGCCCCCCCAGAGGAGAGGCAGAACAAGGATGAAAGCAGCAACACTGATAGCCAGAACCAGCCGGCCTATAAAAATGTGCCTGGCCCCTGTGACCCCGAGGACCTTTTGGATGGGGTGATCTTTGGGGCCAAATATTTGGGCTCCACACAGCTAATGTCAGACCGGACTCCCTCCACCAATGCACGAATGGCCCAGGCTCAGGAGGCTGTGGACAGGATTAAGGCTCCAGAGGGCGAGTCCCAGCCTATGACTGAAGTGGACCTCTTCATCTCCACACAGAGGATCAAAGTGCTCAGTGCAGACACACAGGAGGCCATGATGGATCACTCTCTTCAGATGATCTCCTACATCGCCGATATCGGCACCATCGTCGTCCTGATGGCTCGCAGGAAGCCAGTTGGCCGGAAGGGGACGGAAGTGGGGTCGGCGGCCGCGGCCACGGCCAGCTCTCCAGCCCAGAAGAAGTGCTGCATGATATGTCATGTGTTCTCCTCTGAGGACGCTCAGCTGATTGCTCAGGCAATCGGACAGTCGTTTGGCGTGGCCTATCAGCAGTTCCTTCAGGCCAATGGCATCAAGCCCAGCGAGCTGCGGCCCAGCGAGTACAGCGACTACCTTGGCACCCAGGAGCTGTACAACGGCGACCTGGTGCACTTCTCCCGTTCAGAAAACATCAGAGAGGTGTTGATCTCAAAGGCCCGGGGGGAGATCCTAGGGCTGGCAGTAGTGGAGTCGGGCTGGGGCTCCATCCTGCCCACGGTGGTGGTGGCCAACCTGCTGCATGGGGGGCCGGCCGAGCGCAGCGGCGAGCTCAGCATCGGGGATAGGGTCATGTCAGTCAACGGCACGAGCCTGGTGGGGCTGCCGATCGCCACCTGCCACAGCATCATCCGGGATCTGAAAAACCAAGAGGAGGTCAAACTCAGCATCGTCCACTGCCCCCCCGTTACCATGGCAATCATCAAGCGCCCTGACCCCAAGTACCAGCTAGGCTTCAGTGTGGAGGATGGGATTatctgcagtcTGATGCGGGGAGGCATAGCAGAGCGCGGTGGGATTCGGGTGGGTCACCGTATCATCGAGATCAACGGGCAGAGCGTGGTGGCCACACCGCATGAGAAAATCATCCACATCCTCACGCACGCTGTGGGAGAGATCCACCTGAAGACCATGCCTGCCTCCACCTACCGCTTGCTCACGGGACAGGAGCAGCCAGTTTTTCTCTGAGGAAGGGTTGCAGGGGATGTTGGGGTGGAAAGAGGTTGGAGCTGGCGAGAAGTGGCTGTGATGGGTAGGGGGGGATGATTTTCCCCCTCCTGCCTGCTGAATCATCATCTACATCACTCTTCATCATGACAATCCCACTCACAATCTCTAACGGCCTCATATCCACCTTTCCTGACAAGATtttagatctttttttttttttccggtcTTAATGAGAACTGGCCTGTAGCCGTCAAACTAATACACTTTTTATCACTGGAGCTGCAGTACGGACAGACAGTTCACAACCTGGTGCATTTCTCTCCAACCCCCTAGCAAGTCTTGTAAGGTCCCGGATCCACAGTCCTGGGAAATGGAAAGTCCTTTTCAGCAGAGTTTGTGCAGCATGAGTCCCTACGCTGTCAATCGCCCTGCGCCGATGTGCCTCGATCACCTTTCCTTGGATAAATCTCTTATTTAGGGCTGCTGGAAAGCTAGTCTAGTCCTGTTTAGCTCCAAATCTATAGGTGGTCTCCCAAAATGCCTGATTTTAACTAAGTAACACAGAATAATCCCCCagtgttttttagttgtttagCCCTAGtgctgttttcctgtttttagtCGGTCATCACCGTCTCTGTGCGACTCAGAGACCCTTGCAGTTGCATGAAGTATTCTGAAGCTCTCCATTGTTAGGCTTCAAGGAGCGCCTTGACCTGCGTTTTGCATCGGTCTGTCTTAACAATATATCGGTGTATATTTTTGATAAACGTAAAAGCATTAAtggatgtttattaaaaaacaaacggtattaaaaaa

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006070 True 3002 mRNA 0.56 10 15188224 15196741

Neighbor

gene id symbol gene type direction distance location
AMCG00006090 NA coding upstream 3011 15181964 ~ 15185213 (+)
AMCG00006091 NA coding upstream 31719 15148938 ~ 15156505 (+)
AMCG00006093 NA coding upstream 91387 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 146297 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 196866 14990894 ~ 14991358 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 8113 15204854 ~ 15215919 (+)
AMCG00006072 NA coding downstream 33224 15229965 ~ 15271081 (+)
AMCG00006048 NA coding downstream 93915 15290656 ~ 15298380 (+)
AMCG00006051 NA coding downstream 105023 15301764 ~ 15306184 (+)
AMCG00006052 NA coding downstream 132056 15328797 ~ 15356105 (+)
G155974 NA non-coding upstream 999 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 77049 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 79028 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 81821 15105595 ~ 15106403 (+)
G155929 NA non-coding upstream 84845 15100320 ~ 15103379 (+)
G156042 NA non-coding downstream 233735 15430476 ~ 15431939 (+)
G156082 NA non-coding downstream 364862 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 581458 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 636338 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 1267267 16464008 ~ 16467676 (+)
G155932 NA other upstream 80490 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 82657 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 528727 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 763478 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 804644 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 381343 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 767692 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 836151 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 857294 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 926387 16123128 ~ 16145238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_01761592_01770386 NA coding CI01000330 null 1759205 ~ 1770910 (+)