AMCG00006022


Basic Information

Item Value
gene id AMCG00006022
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14420382 ~ 14424746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006022
ATGACAGAATTCTGGGCGAGCGGCAACTTTGATCCAGCCGTTCGCAGGCGCCTGAtTGATCCAATCGCCATGAAGTACAGTGCCTTCTTCTTCCTTCTGCTGCTCACATGCCTGTATCTCAGCCTGGCACAAGGTTCCTATGAGAATTGCTGTCTGAAATACGTAAGGAATGTGCCCAGACACCTCCGCAAGACTGTGACTGCTTACCGTATACAGGAAACGGATGGGTCCTGCAATATTCGAGCCATTGTGTTTATCCGGAATAATGGAAAGGTTTTCTGTGCAGACCCCAAAATCCATTGGacaaatatgttaattaatcGACTTAAGAGGGCAAATAAGGAGAAAAAAGTGAgTCAAATCCGGAAACTTATAGAATGGCGGAAGTAGGAGCCTGTATGGTCCCTTTCTCCAAGTATTATTTCAGCAATGTTTCCTGGCAGCAATAGTGATTGTACTGAGAGTAACTGACCCACTTTGAACTTCTTCTCCAGAGTCAATACACCTGGTCGCCACTCAGCGATCCGCCATGCTGAGGTAACCAGCCCAGCACAATGGATAATCCAGACAATTACAAAGCATCTGAATCATACAAGGTCCTTGTCTAGAAGGGCAGATACATCTTGcatacaattttgttttgttgcatacACACTAAACATATATTCATCTATATCTGAAAAAGGGTCTTTCCAAGCTTTGGAGAAAAAGTATGCTTGCATTTGTCCACATGTATCCTGAATGTGAAACTATTTCAGCTTGAATGAAGTGTATATTAGTTTTCAAATatctattttcttattttctttgtttgtgtccAATTTAAATGGGAAACAGACTGAACTCTGGTGGGTGCTTTAAGGGGTTAATGCAGTTTTCAGTACTCCTGCAGATTTAGACCTGTTAGACCCGTGATTATGGGCTGCtagttatgaaaaacaaatattccaaAATCAAATCCATTACTGCTTTAGTCAAAATGATTGCCATCTTTACTAAACTGTACATTCATTATACCTgagcaggaccagggttggataGCAATGCTCCATTTTCCATGGTGTTGAACTAGTACGTAATTTATATTGATCCAGTGAGTCTGATATTGCATTATCACCCAACACCAAAGTACTTTTATTGGTTTATCGGACCAAGTATAACTGGTCAATAAAGTTGCTGATTATGTATGGATTGCCACTTAATAAATCCATTTGTCCAGCATTCACGCCAATTCTTAAATCTCTGGAAATCAATCTTAAAATGTCTTTGCTTGTGatataaagtaatataaatcAGTAATAAGGAAATAGTAAATTAATCACACACACGCAGGACAATACTCATCTTGAATGTATGAATAGCTTACAAGTACTGCAAGTACATTTTATGGATTTACTGTGCTTTATTGGAAGCTTTTAAAAGTTGGCAGCTAATCTATAATCAATTGTTGTTGGGGCAGATGGGTTTAAGCGCACTTGCTACATTAAAatctgtatgtaaataaatatatagactaTTACTATTTGCAATCTTGTActgacaaagcaaaaaacaatgtaaatggaCAGAATGTGAAAAACCTGTTATGAGTTTATTGCTACTCTTTGAAATGAATGTCTGTGATATACAACTATTGAACTTGTGTCATTTCAAACAGTGTGTGATGTTTTGGAAGAATGTTTGTGTGAGACGTATTGTAATTGGAACCACTGCAGCTCGATGAATGGCTTGTGAATGATTTCAAGTGCCTGCTATTATTGAGCCACCATGgtgcagct
>TU196171
CTCTGGGATAAGTAGAAGGAGAAGACAATTTGATGTACACTGACTGATACTTAACATCTGCATCTAGGTAATTtTGATCCAATCGCCATGAAGTACAGTGCCTTCTTCTTCCTTCTGCTGCTCACATGCCTGTATCTCAGCCTGGCACAAGGTTCCTATGAGAATTGCTGTCTGAAATACGTAAGGAATGTGCCCAGACACCTCCGCAAGACTGTGACTGCTTACCGTATACAGGAAACGGATGGGTCCTGCAATATTCGAGCCATTGTGTTTATCCGGAATAATGGAAAGGTTTTCTGTGCAGACCCCAAAATCCATTGGacaaatatgttaattaatcGACTTAAGAGGGCAAATAAGGAGAAAAAAgTCAAATCCGGAAACTTATAGAATGGCGGAAGTAGGAGCCTGTATGGTCCCTTTCTCCAAGTATTATTTCAGCAATGTTTCCTGGCAGCAATAGTGATTGTACTGAGAGTAACTGACCCACTTTGAACTTCTTCTCCAGAGTCAATACACCTGGTCGCCACTCAGCGATCCGCCATGCTGAGGTAACCAGCCCAGCACAATGGATAATCCAGACAATTACAAAGCATCTGAATCATACAAGGTCCTTGTCTAGAAGGGCAGATACATCTTGcatacaattttgttttgttgcatacACACTAAACATATATTCATCTATATCTGAAAAAGGGTCTTTCCAAGCTTTGGAGAAAAAGTATGCTTGCATTTGTCCACATGTATCCTGAATGTGAAACTATTTCAGCTTGAATGAAGTGTATATTAGTTTTCAAATatctattttcttattttctttgtttgtgtccAATTTAAATGGGAAACAGACTGAACTCTGGTGGGTGCTTTAAGGGGTTAATGCAGTTTTCAGTACTCCTGCAGATTTAGACCTGTTAGACCCGTGATTATGGGCTGCtagttatgaaaaacaaatattccaaAATCAAATCCATTACTGCTTTAGTCAAAATGATTGCCATCTTTACTAAACTGTACATTCATTATACCTgagcaggaccagggttggataGCAATGCTCCATTTTCCATGGTGTTGAACTAGTACGTAATTTATATTGATCCAGTGAGTCTGATATTGCATTATCACCCAACACCAAAGTACTTTTATTGGTTTATCGGACCAAGTATAACTGGTCAATAAAGTTGCTGATTATGTATGGATTGCCACTTAATAAATCCATTTGTCCAGCATTCACGCCAATTCTTAAATCTCTGGAAATCAATCTTAAAATGTCTTTGCTTGTGatataaagtaatataaatcAGTAATAAGGAAATAGTAAATTAATCACACACACGCAGGACAATACTCATCTTGAATGTATGAATAGCTTACAAGTACTGCAAGTACATTTTATGGATTTACTGTGCTTTATTGGAAGCTTTTAAAAGTTGGCAGCTAATCTATAATCAATTGTTGTTGGGGCAGATGGGTTTAAGCGCACTTGCTACATTAAAatctgtatgtaaataaatatatagactaTTACTATTTGCAATCTTGTActgacaaagcaaaaaacaatgtaaatggaCAGAATGTGAAAAACCTGTTATGAGTTTATTGCTACTCTTTGAAATGAATGTCTGTGATATACAACTATTGAACTTGTGTCATTTCAAACAGTGTGTGATGTTTTGGAAGAATGTTTGTGTGAGACGTATTGTAATTGGAACCACTGCAGCTCGATGAATGGCTTGTGAATGATTTCAAGTGCCTGCTATTATTGAGCCACCATGgtgcagcttttgtttttggaagctttttttatcttttctgtggcaaaatatattttgtatacatataaaataaaattaacttttgtgAATTACCCTGTGA
>TU196172
CTCTGGGATAAGTAGAAGGAGAAGACAATTTGATGTACACTGACTGATACTTAACATCTGCATCTAGtTGATCCAATCGCCATGAAGTACAGTGCCTTCTTCTTCCTTCTGCTGCTCACATGCCTGTATCTCAGCCTGGCACAAGGTTCCTATGAGAATTGCTGTCTGAAATACGTAAGGAATGTGCCCAGACACCTCCGCAAGACTGTGACTGCTTACCGTATACAGGAAACGGATGGGTCCTGCAATATTCGAGCCATTGTGTTTATCCGGAATAATGGAAAGGTTTTCTGTGCAGACCCCAAAATCCATTGGacaaatatgttaattaatcGACTTAAGAGGGCAAATAAGGAGAAAAAAgTCAAATCCGGAAACTTATAGAATGGCGGAAGTAGGAGCCTGTATGGTCCCTTTCTCCAAGTATTATTTCAGCAATGTTTCCTGGCAGCAATAGTGATTGTACTGAGAGTAACTGACCCACTTTGAACTTCTTCTCCAGAGTCAATACACCTGGTCGCCACTCAGCGATCCGCCATGCTGAGGTAACCAGCCCAGCACAATGGATAATCCAGACAATTACAAAGCATCTGAATCATACAAGGTCCTTGTCTAGAAGGGCAGATACATCTTGcatacaattttgttttgttgcatacACACTAAACATATATTCATCTATATCTGAAAAAGGGTCTTTCCAAGCTTTGGAGAAAAAGTATGCTTGCATTTGTCCACATGTATCCTGAATGTGAAACTATTTCAGCTTGAATGAAGTGTATATTAGTTTTCAAATatctattttcttattttctttgtttgtgtccAATTTAAATGGGAAACAGACTGAACTCTGGTGGGTGCTTTAAGGGGTTAATGCAGTTTTCAGTACTCCTGCAGATTTAGACCTGTTAGACCCGTGATTATGGGCTGCtagttatgaaaaacaaatattccaaAATCAAATCCATTACTGCTTTAGTCAAAATGATTGCCATCTTTACTAAACTGTACATTCATTATACCTgagcaggaccagggttggataGCAATGCTCCATTTTCCATGGTGTTGAACTAGTACGTAATTTATATTGATCCAGTGAGTCTGATATTGCATTATCACCCAACACCAAAGTACTTTTATTGGTTTATCGGACCAAGTATAACTGGTCAATAAAGTTGCTGATTATGTATGGATTGCCACTTAATAAATCCATTTGTCCAGCATTCACGCCAATTCTTAAATCTCTGGAAATCAATCTTAAAATGTCTTTGCTTGTGatataaagtaatataaatcAGTAATAAGGAAATAGTAAATTAATCACACACACGCAGGACAATACTCATCTTGAATGTATGAATAGCTTACAAGTACTGCAAGTACATTTTATGGATTTACTGTGCTTTATTGGAAGCTTTTAAAAGTTGGCAGCTAATCTATAATCAATTGTTGTTGGGGCAGATGGGTTTAAGCGCACTTGCTACATTAAAatctgtatgtaaataaatatatagactaTTACTATTTGCAATCTTGTActgacaaagcaaaaaacaatgtaaatggaCAGAATGTGAAAAACCTGTTATGAGTTTATTGCTACTCTTTGAAATGAATGTCTGTGATATACAACTATTGAACTTGTGTCATTTCAAACAGTGTGTGATGTTTTGGAAGAATGTTTGTGTGAGACGTATTGTAATTGGAACCACTGCAGCTCGATGAATGGCTTGTGAATGATTTCAAGTGCCTGCTATTATTGAGCCACCATGgtgcagcttttgtttttggaagctttttttatcttttctgtggcaaaatatattttgtatacatataaaataaaattaacttttgtgAATTACCCTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006022 False 1778 mRNA 0.38 5 14421418 14424654
TU196171 True 1884 lncRNA 0.37 5 14420382 14424746
TU196172 False 1878 lncRNA 0.37 5 14420382 14424746

Neighbor

gene id symbol gene type direction distance location
AMCG00006007 NA coding upstream 50839 14362274 ~ 14369543 (+)
AMCG00006008 rab8a,LOC103479775,LOC107687930,LOC107696202 coding upstream 62567 14347158 ~ 14357815 (+)
AMCG00006011 tpm4,LOC106573547 coding upstream 94935 14309091 ~ 14325447 (+)
AMCG00006010 tpm4b,LOC107596277,LOC105022485 coding upstream 114606 14300796 ~ 14305776 (+)
AMCG00005994 NA coding upstream 170591 14219279 ~ 14249791 (+)
AMCG00006021 pole4,LOC107680508,LOC107747219,LOC107597157 coding downstream 26172 14450918 ~ 14452853 (+)
AMCG00006025 NA coding downstream 41385 14466131 ~ 14467258 (+)
AMCG00006024 NA coding downstream 47860 14472606 ~ 14477522 (+)
AMCG00006023 LOC107552681 coding downstream 57227 14481973 ~ 14484545 (+)
AMCG00006017 NA coding downstream 61156 14485902 ~ 14488397 (+)
G155634 NA non-coding upstream 235573 14172164 ~ 14184809 (+)
G155641 eps15l1 non-coding upstream 295498 14124608 ~ 14124884 (+)
G155640 NA non-coding upstream 297035 14122998 ~ 14123347 (+)
G155639 NA non-coding upstream 297609 14122127 ~ 14122773 (+)
G155636 NA non-coding upstream 324237 14095023 ~ 14096145 (+)
G155728 NA non-coding downstream 64534 14489280 ~ 14491876 (+)
G155744 NA non-coding downstream 68980 14493726 ~ 14494082 (+)
G155772 NA non-coding downstream 122624 14547370 ~ 14547600 (+)
G155773 LOC106568166,LOC108280735,LOC103375566 non-coding downstream 122913 14547659 ~ 14548153 (+)
G155774 NA non-coding downstream 123850 14548596 ~ 14549068 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 36802 14375995 ~ 14383580 (+)
G155638 NA other upstream 310512 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 321686 14097804 ~ 14098696 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 1386974 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 1524930 12894120 ~ 12895452 (+)
AMCG00006034 vmac,LOC106573562 other downstream 227453 14652199 ~ 14659497 (+)
AMCG00006092 rps28 other downstream 678710 15103456 ~ 15105567 (+)
G155932 NA other downstream 682463 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 1153338 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 1539687 15964433 ~ 15988775 (+)

Expression


Co-expression Network