AMCG00006066 (ddx49)


Basic Information

Item Value
gene id AMCG00006066
gene name ddx49
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15537561 ~ 15544353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006066
AGCAGATCGGCAACACGAGTCCCCAAGTGACAAAACTTATTCAGTTTCACAAGCTTGTCACATTGTTCCAGATTTTGGTGTCTTTGCTTTTAAAGTCGACAACAGGAGTAGAAGACGCCGCGGAAGGGGGAAGATGTCGGGTTTCTCCTCTCTGGGTATATCGGACTGGTTAATAGGCCAGTGCAAGCAGATGGGAATCAGCAAACCCACGCCAGTCCAGGAAAGCTGCGTGCCTGCCATTCTAGAAGGTCGTGATTGCATGGGCTGTGCAAAGACAGGGAGCGGCAAAACGGCTGCGTTTGTCCTGCCAGTGCTTCAGAAACTCGCCGAGGACCCTTATGGCATCTACTGCTTGGTGCTCTCACCGACCAGGGAACTGGCCTATCAGATCGCGGAGCAGTTCAGAGTGCTGGGCAAACCGCTGGGATTGAGAGACTGTATCATCGTTGGAGGAATGGATATGGTTAAACAAGCCCTGGAGTTGTCCAAGAAGCCGCACGTTGTCGTAGCTACCCCGGGGCGATTGGCTGATCACATCCGGAGCTCCAACACTTTCAGCCTCAAAAACATCCGCTTCCTGaTTTTGGACGAGGCTGACCGGCTGCTGGAGCAGGGCTGCACCGACTTCACCAAAGATTTGGAGGTGATCTTGGGCGCCGTGCCGGCCAAGAGACAGACATTGCTCTTCAGCGCCACCCTGACGGACACCTTGCAGGAGCTGAAGGGCATTGCCATGAACAAGCCCTTCTTTTGGGAGAGCAAGTCTGAGGTGCGCACTGTGGATGAACTGGACCAGAGATACATCCTGACCCCAGAGAAGGTCAAAGACGCCTATCTGGTGCATCTCATTCAGAAGTTCCAGGACGAGCATGATGATTGGTCCATCATAATCTTCACCAACACCTGCAAGAACTGTCAAATCTTGAACATGATGCTGCGCGAGTTCAACTTCCACTCCGTCGCCCTCCACTCCATGATGAAGCAGAGACAAAGGTTTGAAAATCTAGCCAAGTTCAAGTCCAGCGTATTCAAGATCCTCATTGCTACCGATGTAGCAGCCAGgggTCTGGATATCCCAACCGTTCAAGTCGTCATCAATCACAACACGCCCGGCCTCCCCAAGATTTACATCCACAGGGTTGGCCGGACAGCCCGAGCAGGAAGACACGGCGTCTCCATCACACTGGTGACGCAGTACGACATTCATCTGGTCCATGCCATCGAGGAACAAAACCAAGTCAAGCTGAAGGAGTATTCTGCGGAGGAGGCGGAAGTGCTGAAGATCCTCACCCAGGTCAACGTGACGAGACGCGAATGCGAAATCAAATTGGAGTCCACAGATTTTGACGAgaagaaggaaataaacaaaaggaagCAGCTGATTCTGGAAGGGAAGGACCCCGACCTGGAAGAGAAACGAAAGGCTGAGTTGGAGAAGATcaggaaagagaagaaaaagttCAAGGCCAAGATCCAAGAGAGCATCCAGAAACAGCAAGAAATTGTGctcaagaagagacagaaaaaaaagcagccaCATAAGCAGGCGGCAAAGACAGATTGAAGCCATTTTGCTCCAGTATTGTACAGACGGCGCCACCTGCAGGACTCGACTAATTAACTCACACAAATGTGCTGTGGAGAAGGCAGCTGAAATCTTTAACTTAAATGACCACCCCATTCATCAGGAGTATCCAGGGATAGAAGCAAGTGGTGGATTTCAGTGCTTCAGTGCAGGACCTCTTTGTCCAAGATTCATGAACAATTTGTTACTATGAATGTGTTATTTGatcattgtaaataaaaatgtaacctgAA

Function

symbol description
ddx49 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX49

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006066 True 1818 mRNA 0.50 13 15537561 15544353

Neighbor

gene id symbol gene type direction distance location
AMCG00006076 rps15,rig,LOC107578086,LOC107685215 coding upstream 100884 15433541 ~ 15436677 (+)
AMCG00006078 NA coding upstream 107154 15402929 ~ 15430407 (+)
AMCG00006077 ndufs7,LOC107747413,LOC107597168 coding upstream 140464 15392880 ~ 15397097 (+)
AMCG00006049 NA coding upstream 159456 15373975 ~ 15378105 (+)
AMCG00006050 NA coding upstream 165423 15366054 ~ 15372138 (+)
AMCG00006060 LOC106613630,LOC106573907 coding downstream 58579 15602932 ~ 15603849 (+)
AMCG00006059 NA coding downstream 64346 15608699 ~ 15614431 (+)
AMCG00006061 NA coding downstream 95919 15640272 ~ 15640478 (+)
AMCG00006073 NA coding downstream 182317 15726670 ~ 15745152 (+)
AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding downstream 208875 15753228 ~ 15766640 (+)
G156042 NA non-coding upstream 105622 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 350336 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 426386 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 428365 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 431158 15105595 ~ 15106403 (+)
G156082 NA non-coding downstream 17250 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 233846 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 288726 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 919655 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 960417 16504770 ~ 16505206 (+)
G155932 NA other upstream 429827 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 431994 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 878064 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 1112815 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 1153981 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 33731 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 420080 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 488539 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 509682 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 578775 16123128 ~ 16145238 (+)

Expression


Co-expression Network