pole4 (pole4,LOC106613703,LOC107685140)


Basic Information

Item Value
gene id pole4
gene name pole4,LOC106613703,LOC107685140
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19854685 ~ 19860286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925573.2
TCACTACATGACGTCGCTCCAGCGCCCCGCCCCTTCCCCTCTGTAGTGTGATTTGGTGGGAGAAAAATAGCGCGCGTTCAATACACATTTCAAATCGCATGTTTACTGTAGGGATTGTTGCAGCAGGTATTCAGCACCGGGGTGACTATGGCCATGACGGGAGTagcggtgagtgtgtgtgcctcAGAGCCGGAACACGAGCGGGGTGAGGAGGAAGTGCGGGGAAATGAACCCGAGGAGGAGCAGTCACAGCACAGCGGGCCTGCCGCCGGCCCTCAGCATCGCCTCGCCAGATTACCCCTGTCCCGGATTAAAGCCCTCATGAAGGCTGACCCGGACGTGAGCCTGGCGAGTCAGGAGTCTGTGTTCATCATCGCTAAAGCCACGGAGCTGTTTGTGGAAATGATAGCCAAGGATGcgcttgtttatgcacagcaaggaaaaaggaaaacgCTACAGAGGAAAGATCTAGACAATGCTATTGAGGCAGCAGACGAGTTTGCATTTCTAGAGGgtaccTTGGACTAACTTGCACGTGCCTTCCTGTAATAAGGAAAAGAttgatattttgtttatttttgtacagtTTTGGCCTGGGGACTCTATTTTTAGGACAAATGGGGTTGTTTTTAGTATGAACATGTACAGCTTAGAATATATTGACAAATGTATGTGTGAAATTTGTCTGTGAAGTgacaattttatttgtgaataCTACTATGCtcttgcaaaatattttaatgttgaaataaaatcgtattattattattatta

Function

symbol description
pole4 Predicted to enable protein heterodimerization activity. Predicted to be part of epsilon DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human POLE4 (DNA polymerase epsilon 4, accessory subunit).

NR:

description
PREDICTED: DNA polymerase epsilon subunit 4

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03506 POLE4; DNA polymerase epsilon subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925573.2 True 774 mRNA 0.46 4 19854685 19860286

Neighbor

gene id symbol gene type direction distance location
nr2f6b nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 46327 19799656 ~ 19808358 (+)
ushbp1 ushbp1 coding upstream 58517 19781228 ~ 19796168 (+)
gtpbp3 gtpbp3 coding upstream 90634 19746882 ~ 19764051 (+)
dazap1 dazap1,LOC107685225 coding upstream 162905 19676216 ~ 19691780 (+)
ndufs7 ndufs7,LOC107680537,LOC107747413,LOC107597168,LOC107685366,LOC107553547 coding upstream 195265 19652838 ~ 19659420 (+)
ctns ctns coding downstream 43872 19904158 ~ 19911209 (+)
LOC113535596 vmac,LOC107680554 coding downstream 99415 19959701 ~ 19964557 (+)
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding downstream 109271 19969557 ~ 19971347 (+)
apc2 apc2 coding downstream 216327 20076613 ~ 20103052 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding downstream 245424 20105710 ~ 20120596 (+)
G184823 NA non-coding upstream 45431 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 150435 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 190194 19661092 ~ 19664491 (+)
G184614 NA non-coding upstream 252046 19548663 ~ 19602639 (+)
G184503 NA non-coding upstream 391842 19461824 ~ 19462843 (+)
G184882 NA non-coding downstream 61185 19921471 ~ 19947483 (+)
G184900 ndufa11 non-coding downstream 94308 19954594 ~ 19955040 (+)
G184988 NA non-coding downstream 404650 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 405422 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding downstream 406313 20266599 ~ 20294374 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 9447 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 20271 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 154411 19695227 ~ 19700274 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 299716 19532081 ~ 19554969 (+)
LOC113546543 NA other upstream 306473 19526877 ~ 19548212 (+)
ccl44 LOC108271213 other downstream 5512 19865798 ~ 19871463 (+)
G184979 NA other downstream 289685 20149971 ~ 20150894 (+)
wipf2a LOC108270800 other downstream 1328962 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 1391859 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 2098602 21958888 ~ 21958959 (+)

Expression


Co-expression Network