apc2 (apc2)


Basic Information

Item Value
gene id apc2
gene name apc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20076613 ~ 20103052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920781.2
GCAGCGTCGCGCGCACAGCAGCGTTCCTCTCACAAGCCGCGCTCGAGCCGAGTCCACACCCGACATCACTAACTGCTCCAAAATGAGGGACCCCATTTTGTGATGATGTCCAACTCGGTGGCCTCCTATGACCAGCTGGTGCGGCAGGTGGAGGATCTCCGCAAGGAGAACTCGCACCTGCGCCGCGAGCTGGAGGACAACTCACACCACTTGTCCAAGCTGGAAAATGAGACTTCTGATATGAAGGAGGTTCTGAAGCATCTGCAAGGCAAACTGGAGCAGGAAGCCTGCACTCTCGCCTCTTCAGGGAGAGCGGATGTGCTTGACCAGCTAAAAGAGCTGCATATGGACTTGACCAACTATTATGAGCTCAAGTACCAGCCACACAACCTGCGTGTATTCTCAGAGACCACAGCCAACCAAACGAATGATGGGGAGGACAGAATGCAGCTCTCATCATCCAGCATCAGCAGATCAAGGAGCTCTGTCTGCTCATCCTCCCACCAGTGCTCCTCTGTGTCTGGTGAGGGTACGGCCATGCACCCCTCACACCTCCACCCAGCCGTGACAGCAGAGGGCCGTGTCACTGCCCAGCATCTAGAGGAGCTCCGCAAAGAGAGGACCATGCTGCTGAATGAAAttgagaaagaggagaaagagcgCCATTGGTATTATTCTCAGCTGCAGGGGCTTTCACGGAGGCTGGCAGAGCTGCCTCGAATTGACACATTCTCCATACAAATGGACCTTATTCGCCAGCAGTTAGAATTTGAGGTCCAGCAACTACGCTTAGTCATGGAGGAGCGTTTTGGCACCAGTGATGAAATGGTCCAGAGAACACAGATCCGTGTGACTCGTCTGGAGCAGCTGGATAAGGAGTTACAGGAGGCACAAGGCTCGCGCTGTCCCCAGGAGAAGATTGGCCAGTCAGAGAATCAAaATATTGACAGCCTTTCCAAAGCATCAGTGCCTGAAATGGAAAATGGAGCAAGCACTAGCACTATGGAGGCACCTGGAGAAGCCGGAAACAAAGTGGAGATGATGTTCTGGCTGTTGTCTATGCTAGCCTCTAGAGATCGAGAGGAGATGTCCCGTGTCTTGTTAGCCATGTCCAGCTCACAGGAAAGCTGCATTGCCATGCGCAAGTCTGGCTGTGTCCCCTTGCTTGTGCAAATACTGCATGATGTAAGTACTGGAAAGACTCCTGATGCCACAGGCTGCAGCCGGGAGGCTCGATCTCGAGCTAGTGCTGCTTTGCACAACATTGTGTACTCACAGCCTGATGAGGGCCAAGCACGGCGTGAGATGAGGGTACTTCATGTGCTGGAGCAGATACGCTCACACTGTGAGAATGGCTGGGATTGGATTGAGAACCATGTAGGAACCCCGTCACCTAGTGGTACAAAGACCACAGATATCCCAGAGCCCCTAGATCCCCAGATTTGCCAGGCAATCTGTGTCATAATGAAACTTTCCTTTGAGGAGGACTATCGAAGGGCCATGAATGAACTTGGTGGACTTCAGGCTATTGCAGAGCTTATGCagttggaacaggaagtgtatgGTATGCAAAATGAGCCTATGAATATGGCCCTGCGAAGATATGCTGGGATGGCACTCACTAACCTTACATATGGAGATGTGGTAAACAAGGCCACACTTTGCTCTAAGAAAAGCTGTCTTCAAGCCATTGTTGCTCAACTGGCATCTGATAGTGAGGAGTTACATCAGGTGGTCTCAAGTATTCTTAGGAACCTTTCGTGGCGTGCTGATATCACCAGTAAGAGAGCTCTTCGTGATGTTGGCAGTGTATCGGCACTAATGACCTGTGCACTTCAGGCTACAAAGGAATCCACCCtaaaaagtgtattaagtgCTTTATGGAATTTATCAGCACATAGCACAGAAAATAAGATGGCAATTTGCTCCGTTGATGGTGCTCTAGGATTTCTGGTCAGTACCCTTACCTACCAGTGTCAGACCAACTCCCTGGCAATAATTGAAAGTGGTGGAGGTATCCTGCGTAATGTATCCAGTCTTATTGCTACCCGTGATGATTACAGACAAGTTCTTAGGGATCACAACTGCCTGCAGACTTTGTTACAACACCTGCGATCACACAGTTTAACTATTGTGAGCAATGCATGTGGAACCCTGTGGAATCTGTCTGCTCGAAGTCCAAAGGACCAAGAACTACTGTGGGATCTAGGAGCTGTTAGCATGCTGCGTAATCTCATTCATTCAAAGCACAAGATGATAGCCATGGGAAGTGCTGCTGCTCTGAGAAACCTCCTCACCAACCGCCCACTCAAATATAAAGATACTGCTGTTATATCACCAGGCTCCTGCATGCCCTCACTCTATatgagaaagcagaaagcacTGGAGGCTGAGCTAGATGCAAAGCACCTGGCAGAAACATTTGATTCAATCGAGAAACAAAGCCCTAGGCATATGAACATTAACAAGCCCCTACGACATATTGAAAGCTTGGCCAAGGACTATGCCTCAGATTCTggatgttttgatgatgatgaagccCCAAATGTTTCGAGTAGCATAGAAACAGGAACATTTTCCATGCTCTCTATGTTTTTGAATAACTCAAACTTCCTTCAGAATCAGCCCCGCAGGAGGGAGGGAGAACCTGAGAGAGATGTGCAGTCATTACAAACAGAGGATAAAAAGACACAATCTCCTGATGATGAAGTGACCGTGGCAGCtgaaaaattagcaaaaaagaTCACCAACACTGTGGCTAAAATTGATAAGCTAGTCGAAGATATTACCATGCACACATCTTCAGAGGATAGCTTTAGTCTCAGTTCTGAGGACCATTTTGCAGATTGGAATTATGGGCCTGATGATCTCCATGAGGCACGTGCTAAGCTGTGTTCTCCCTGCCGTCTTTCTGATAATTCATTCTCACACAAAGACCATCTCAGCAAAGCCCATGCTCTGTTAAGACTAAAAACAGTGAACTCAAGTATATCCAATGACAGCCTTAACAGTGGTAGCAATAATGATAGCTGCTGTAGTAGTAATGATCAGATTCAAAGTTCCGTAAGGCCAGCAGAACAAAGACGTCCAAACAAGCTTGAGCTCAAGGTGGCTCACAAGGAATTGTTAAATAGTGGTGCCACTTTATCCAAATTAATATGTCAGAATGAGATACCTGAGAGAGATTCTGACATGGCAAAAGATTTAAAATTGCCTGACTATAGCACAGTAGGAGAACAAGGCCAAGAAGCTCTTAtagcaacaccagcaactgtaTCAACCAGGGTATCTTCTGATGCCAGTATACCTACCATTAAGCTCTCCCCCTCCTATCAACATGTTCCACTAACCCAGAATGCCATGTTTGGTACTGTCAATGTTCAGGCATCCCAGgcaatgaaaaaacaaacatgggaCCCCACTGTAACAACTGGAGAAAATATTAGCAAGTTCTCTCCTATATGCTCTTCAAGAAGCCCAATTGGTCAACTAGAGACACCACAGAAGTACTCAGTGGAGAATACACCAATCTGCTTCTCACGTTGTAGCTCTTTGTCCTCTCTTTCTTCTGGTGATGGAGACCTTGATGGACAAAGCGAAAATGATTTAGAGAGTGACTCATCTCTTGAAATTATTGAGGTTGAAGATGGtgatataattaaaaaagatgACGAAGATGAAACACTAGAGGATCTCAGTGATAGTCAACTGCTTATGACTGACCAGAAGACTTGCCCCACTACTAGCAGTACTTCTGATCCCATTGAGATTCCGATGAGACATGAAAAGACATTTCTTAGGGAAGCATCAGCAGTCATACTTGAGGACAGGACTCCATCCAGTTCCTCTGAGAATTACCTTCATGAGACTCCACTTGTGATGAGCCGTTGTAGCTCCGTAAGTTCACTGGGTAGCTTTGAGTCCCCATCAATTGCCAGTTCTATACAAAGTGATCCTTGTAGTGAAATGGTAAGTGGAACTGTGAGTCCAAGTGATCTCCCAGACAGCCCAGGACAAACCATGCCACCAAGTCGCAGTAAGACTCCATGCTGTGCTGACGTAAATGGACCAGAGCAGCAAAATATTGGTGGTATTGGAGGCCAGTGGGAAAATGGCTTGCGTAAGTTCATGGAAATTGCTGACTTGAAGGAAAGGTTTAACTTGCCACAAGACCTAGACACAATGATCTACTTCACTGTTGAAAAACCATTAGAAAACTTTTCTTGTGCATCGAGTCTTAGTGCCCTTCCTCTGCATGAGCACTATGTCCAAAAAGATGTAGAGCTTAAACTTACTCCTTTGTTAAATCAACAAGACAATGAACCAGTATACACTGGTAAGAGGAATCCTGCTGATTATCCATCATGTATGGATCAAGATCAGTACAGTGAGGGCAACTCAGATGATGACATTGAAATTCTCAAAGAGTGCATCAATTCAGCCATGCCCTCAAGGTTTAAGAAAGTAAGACCTGCTTTAATGTCTACAATCTCAAACCAAGTACTTAACACCCAAGCTCGAAGATCTGTGCAGTTACCAGTATACATGGTGCTCCAGAATAATAACAATCAGATGTGTTCTGGGCGAAAGgttggaatgtctgcaaaagaTATTCATCATGATGATTCTTCATACACTGATTCCGCTGAAGGTACTCCTGTTTATTTCTCAAGCACCACTTCCTTAAGTGATGAGACTCTTCAATACCCCCTCAAAGTGAAAGGGTCAAGAGATTGGCGTTCCAGAAATAAAGAGACGCAGGAGCTTATTGATACAGAGGCAAAAAGAATTGAAGAGCTACGTCTATTTTCTCGTTTCCATAAATCATCTAAAATGGCATGTCAGTCTGAAATAGTAACAAACCAAATGAACAAAACCATTAAACATATAATGCCTACCCAAAGATTACTTATACAAAGTAAGGAAATGGCAGCAAAGATGACTCAGCAAAGAGTCCAAAGCCAATCCCCAATCAGACAAATACAAAAGCAGGGACAGAATCTGTCACAAAGTATGCCCCATATAGCGCTTCCAATCAGAAAGCAAAGTAAAGAGATGTACCAAAGTCAGAAATCATACTCTAGAAGTAAAGCACAAGAAATTGCAGCTTTTCAATCCATGCATCATCCAGCAGCAACAGAGGAAGCCATGTACTGCTTCCACGATAATGATATGGCTAACAGTGATGGGGTGATGGCAAGAAGTAGACAGAAacagtttaataatttaaacaaaaataatgtagGTCTCCATTATGCTAATTCAAAAGGTCGTGTGGACAATTTCCAGAGACATGGGTTTCACAGAATCAAGCAAAATCTAATTATGGAAGAAGCACCCCCATGTTACTCTCTCAGCTCATCTCTCAGCTCTTTGAGTGATGTAGAGATGTTTGAGGAACAGGGGAAAACTCAGCATGTAAAGttgagaaataaatacaatgtaATATCCAGCACAGGTCAGTGTACCCTAAAAACCCAGCAAGGccaaaataaatatgaagacaACACTTCACCAAGTTCTGTCAGCCTGGACTCAGAAGATGATCTTTTGTTAAAATGCATAACATCTGCTATgccaaagcaaaagaaaaagcaagccaccagaaaaaggaaaggagaggctaaacaaaaacagaaaactacTCAGAAGGAAACTGGGCATTGGGATCCTGAAGATGATCTGGACAGTGAAGAAATGGCATCTGACAAAGATTCAGATCTCAACAGTGTTGAATGGAGGGCAATACAGGAGGGTGCAAATACAATAATCACAAAGTTACAAGCTTCAAAGTCCCAGGAACCATCATCAGAATCAGACTCTGTTCTTTCATTTATATCTGGATCCAGCTTCACCCCAAAGCCTGACATCAATGACAAGAAGAAGGCGgtcaaagaaaacaaaaaggcaaATAAGCCACTTGATTTTGCCCCACGTAAACCAGTACCAAACttgcctgtagttttcagaggCAGAACAGTGATATACACTcccaagaaagagaaaacacttTCACAGCGGCCACCACCTAAGAAGGTGATGCCTAAATCTGATGGCCCAAAAAATCCTTCCTTAGCTCAGCACCGGTCCAGAAGCCTTCATAGGTTGGGGCACCTTAGTGACTCTACTCAGTTATCATTACCCAAGAGAAGTTCAACTCCTCCTGCCAGGATTCCAAAGAGTTCCTCATCAGGATCATCTCAAAGTTCAACTCCCTCAAGGCAACCTCAGAAAAAAGTAACCCCTTCTACCCAAACCATTAAACAAAATCAGAAAATGGTGACCTCGGATCCAGACAGTCCACCAGACAAAAAAAGAGGCACCTCCATGTCCAATCAAAACCCAAGATCTGCTgacaacaaaacacagaaatctCCTGTCAGAATACCATTCATGCAGAATTCATCAAAGCAGGCAAGAGCAATTTCACCATTAGTAACCAACCAGCTTACTAGCATTAGTAGACAAAATAGTCAGTTATCAGGGAAGAGAATTTCACCAGCCAGTCGACTGGATTTAGTTCGCATGAcctctgctcattcatgcagtggAGAATCAGACCACAATGGTTTCCTTAGACAACTTACTTTTATCAAAGAATCATCAAGACAGAATGTTTCTTGTTCACGATCTGTTCCTACATCCAAACATGTGTCTCCTCGAAGAACATGTCCAGGAGCCCCAGCAGTTTTCCTATGCTCTTCTCGCTGCGAAGAACTGAAGTCAGCAGTGCAAGGTCCACGAAGATTGCAGGGACCCCAAGGGCCAAGGAATGGTCATGAACAAGGCATCCTCAAGCAGAGCATGGCTCTACCAAGGGCAAACTCTAGTGACAGGAACTTCACAGTGAAACGTCCAGCCAGGAGAACAAGTTCAGAAAGTCCCTGCAGGGTGCCTCAGAGAACTGTACCTGAGCCAAATCTACGGGAGACAAGAGAGGATACATTCAAAAGGTATTCTTCCTCCCCCAGTATAAATATCTTAAGTCGTGTTACCAGTCGCTCCTCATTGCGCTCATCATCTTCTGACTCAAGTGTCAGGGCTAAGAGTGAGAAGGACACAAAACAGAGGCAGAATAGAGCTGGATCAcggaataataacaataaagtcACCTGGAGAAGAATCCGTGATGAAGACATTCCCCAGATATTAAAGAGCACTCTCCCACCAACTGCACTCCCTCTGGTGCCTTCCCCTGAAGGGCACAAACCAATGCCACCGCCACTGCCAGGAAaattgccaacaattacacttaTATCACGCAAGACAAGTGATGCAACAGTTCAAACAGAGGACTTATCAACCAATAAAACCAACTCAAGCACATCACCTACAATTGAAAATGGTTCTATGATTTCAGAAGAGGTAGCTAAGATGGCCCTTCTGAGAAGAATCAGCCTGGCCTCTGTGAGTAACCTGCATGATGGAGATTCTGATGGATCCCTCAAAAACTACAGCACAGCTTCCACCTCAACCTTTCAGTCTGTGGAGAGCAGTCATAGTGGAGTCATAGGTCCCTTCCGTCAGAGCGCTCCCAGCAAGGCTGTCAGAGTGACACCATTCAACTATGTCCCCAGCCCTATGGCCTATTGCTCTCAAGATACACAGAGCCATGCACCAACAATCCCTGAGAAGTCAGGTGAAAAACTTGAATCGTAGTGCCCAGGCTCTGTCATTGTTGCAAGGTTGACTTGTTCCTGATGCTATAAAAACTCAGGTGGTTTATTGAGCAACATTATCTATATACCTCGGATGTTGCTTTTGACAAACATTGTATTCAtgggttttgtatttttatcacTGGAAGTTGGGTGTAGACAAATTAGCATGAACAGTAGAATCTTTCATCAAACTACAATGGATTTAAGCTACATATGGAACTTACCATAAACATGAagccatccttttttttttgacatttttgtaaAGTTACATATATGAACCATTGCTTGTTCTGTTGGAAATcctaaacacacaaaagacatACTCTACTTTATGGACCACAGTAGACAGCTCTGCATTCATGAAgaataatatgcaaatcatcCAATATAAGATATtcgttcatttaaaaaaaaaaaaaaaaaaaaaaaaaaattccacctaAAACCTGAAAAGACTGTTACAGTGCGagagacaaaacacaaacatgtatGCATTACAAGTATACACTTTTTTCTTGAATGCCATTATCCCACACTGTCAATGATTCTAAAAGCCCTTAGCCTTCACTTTTATTATTGCAGATAAATATATTTGTGGTAGAGCAGCCCAAATTAGCAGCGCAAGAGCATAATGTAATGTTGGAATTTAGTGATGCTGTTGTATATAACTGCAGACAAAGTCTCTCTAATGCTTCCCAGTAAGCAAAAAGTACCCTGTGGCACTACTGCATGCATGCTTAATAGTCACTTAGtgcacatatgtatgtatgttattaATGTTGAACAATCTTTCCTCTGAGAATAAAAATAGAGGAAATTATGggggaaaataatcacacatcTCTATTACTTGTTAAACTGTTTGACACTTATATGTAATACACTTAGGTGGTTGTACAGTGATTTTGCTTGTTGAATACTTTGGTAATGTCAGTTTGTGTATGATCAGGTATGCTTGTGTCatcaaaagcaagaaaaaacaaTTGCGATTTGGGGGAATACTcaacaaaaacaatgtaaaacCTCTCTGATCAACTGACAGTATAACTGATGTTGCTTTTAAATTCAAAGGCGAATGCTAAAATCACCATAAAATAAGTGTATGGACAACAGAAAGCTAACAAATCTTCTGTTCAGATAGCTATATGATGAGCTAATTAACTAAAAATGGGCTTTGaagaattaaacagaaatatataatgtgtgttctCTCTACATACAATGCATCGGTCTAATGAATCAATATCGCAGGCCTAAACCTATTAAAGCCATTTGTATGTATTTAAGCCACACTAGCAATCGCTGCAACATCTTGGCCAGTTTTTCATACTGACAGATGCTTTCAAACAAGAAACACAATTGATTCAGAGTGCTGTTTAGATTGCAGTCATTTCCACAAATAATGTTTTGAGTGTTACAGCCCAATATACTCAAGTtagaagaaaaaagtaaatcCTAATTGTAATTCTGCAAAAATTgtaatgaatcaaaataaatattcctTTATTTCTCATTTGGTAGAGGTATAGAAATTAGGCACAAGTCAATAAGTGAAAATTGTTCAAGtgttaatgcatttaaataagcATAAGCAGGAACATAATGATTGGTGTTCTTGAGCAAAATCCTTAACTCCATCTCCCAGCACTGTTGTACACTGAAATGTTTGGGTACTTTGCCAGACCCTAAACTCTGAATGTATTTGAGACCAACAGTATTATACAGTGATGGTCACTGGTTGATTTCCATAATAAATGTTCACATTAAGCTTCA

Function

symbol description
apc2 Predicted to enable beta-catenin binding activity; gamma-catenin binding activity; and microtubule binding activity. Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; negative regulation of microtubule depolymerization; and positive regulation of protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex and catenin complex. Predicted to colocalize with cytoplasmic microtubule. Human ortholog(s) of this gene implicated in Sotos syndrome 3 and complex cortical dysplasia with other brain malformations. Orthologous to human APC2 (APC regulator of WNT signaling pathway 2).

NR:

description
adenomatous polyposis coli protein 2

GO: NA

KEGG:

id description
K02085 APC; adenomatosis polyposis coli protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920781.2 True 9437 mRNA 0.43 15 20076613 20103052

Neighbor

gene id symbol gene type direction distance location
gadd45ba gadd45b,LOC107553537,LOC107597151,LOC107757925 coding upstream 105266 19969557 ~ 19971347 (+)
LOC113535596 vmac,LOC107680554 coding upstream 112056 19959701 ~ 19964557 (+)
ctns ctns coding upstream 165404 19904158 ~ 19911209 (+)
pole4 pole4,LOC106613703,LOC107685140 coding upstream 216327 19854685 ~ 19860286 (+)
nr2f6b nr2f6,nr2f6b,LOC107680506,LOC107747262 coding upstream 268255 19799656 ~ 19808358 (+)
zgc:113223 LOC108271437,LOC108437285,LOC103041228 coding downstream 2658 20105710 ~ 20120596 (+)
sgta sgta,LOC107656077 coding downstream 50932 20153984 ~ 20163045 (+)
LOC113530255 slc39a3,LOC106613601,LOC106573935 coding downstream 60163 20163215 ~ 20170408 (+)
slc1a8a slc1a8a,LOC108271187,LOC108437258,LOC104955947 coding downstream 68838 20171890 ~ 20181242 (+)
tmem259 tmem259,LOC106613615 coding downstream 445207 20548259 ~ 20563932 (+)
G184900 ndufa11 non-coding upstream 121573 19954594 ~ 19955040 (+)
G184882 NA non-coding upstream 129130 19921471 ~ 19947483 (+)
G184823 NA non-coding upstream 267359 19808713 ~ 19809254 (+)
G184718 NA non-coding upstream 372363 19703635 ~ 19704250 (+)
G184617 gamt,LOC107747770,LOC107685360,LOC107597217,LOC107757934 non-coding upstream 412122 19661092 ~ 19664491 (+)
G184988 NA non-coding downstream 161884 20264936 ~ 20265620 (+)
G184987 NA non-coding downstream 162656 20265708 ~ 20320904 (+)
LOC117598445 NA non-coding downstream 163547 20266599 ~ 20294374 (+)
G185042 NA non-coding downstream 328077 20431129 ~ 20431338 (+)
G185037 ptbp1b,LOC107753809,LOC107593132,LOC107674525,LOC107723850 non-coding downstream 332743 20435795 ~ 20436587 (+)
ccl44 LOC108271213 other upstream 205150 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 231375 19836145 ~ 19845238 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 other upstream 242199 19827986 ~ 19834414 (+)
rps15 rps15,abhd8,LOC107685215,LOC107578086 other upstream 376339 19695227 ~ 19700274 (+)
si:ch73-40i7.5 apba3,si:ch73-40i7.5,LOC108271288,LOC107750992,LOC107592849,LOC107661085,LOC105938289,LOC107096970,LOC105910839,LOC106516779,LOC107550530,LOC102779936,LOC101467998 other upstream 521644 19532081 ~ 19554969 (+)
G184979 NA other downstream 46919 20149971 ~ 20150894 (+)
wipf2a LOC108270800 other downstream 1086196 21189248 ~ 21210539 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other downstream 1149093 21252145 ~ 21265055 (+)
trnap-agg_1 NA other downstream 1855836 21958888 ~ 21958959 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 2209390 22312442 ~ 22381020 (+)

Expression


Co-expression Network