pcdh17 (pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552)


Basic Information

Item Value
gene id pcdh17
gene name pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22312442 ~ 22381020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU220132
GCAGCTATTTTTTAATTGTGACAAGTTCTTGtcatttggatttatttttctttctttctttttttattttttcaaatctaAGCCTGCCATTTCATAAAGCAGCGTGGAGTCCCTGGCTAACATTCTGTGATACTGCCTTACTCACTCAGAAAGCTCACATTGTTACTGTAGTGCACTTGACTACAAAGAGGACGGGGGGGATTCTTGAGAATGTGCTATCTTATTTTGTATATAAGGACTTTTGAGCGGTCTTTGTATTCGCttcatatatgtgtgttttcGTTATCGTGAGCCCATCACAATTCAGATGATATTTCATCGCAATTCACACCGGTTCTTTGTCTCGGACTGTGTGAAACTTGATAGCCAAGCAtctatttttctctttgctttgatgtttttttttttttttcctcgcttTTTTATCCGTCTGGAGCTTCACTGTAGCAGTAGAGGCAGAATTCAAATGACGCATTAATGTCAGGTCTGCAGTTCGAGCATTCACCGTAGCTTCTCTTTGTAAAcaacaaatgagaaaataattatttttgattcAGGAGAATACTGACTCCACTGCTTAAATATGTGgagtgaaaactttttttttcctaaaaaatgTAATGGCTGTAAAAGGAGGTAGCTGATCCAATATGGCCTGGTTTTGTTTCTTAAGTGGTGCTGGTCTGTGTCATGAACAGATAATGAGTGCTCATCAGCTTCCCATCTCTCCATTACTGAAATGCAAGACTTTCTTGTACCTGCCTCATCTTGACTGTGTGCTCGAGTGAACTGTTACACACCTCAGGACCTCAAAGAGCCCGTGACTGACTATTTATGACACCTGATGCAGTCACCTGAGGAACAACTTAAACTGCAGCGTACAAAATAGCCTCCTATTATCCTTCATATTCACATAGACATGATAGACAGAACTATTCAcatatttttgctttatatatttatttatctgccaAGAAAGcgctctttctgtttttttttttccttctctccctGTCTTGCAGTGGGTTTATCTACACCCAGGTGCAGAGATATAAGTTTGGCATCAAGGAGAAAACGAAACTTTGTGTTGGTTTCTaattgagtgttttttttcctgcccaAACACAGTGACGAGTCTGATATTTTTGACACCCTCGACATAACCTCAACAAATAATGAAAGGCGGCACGGCGGCTTGCGCTCAGAGCTCGAAGCGGCAACTGACACGAGCGTCTTCTCTCTTCCTTTGCACTCATCATTGTAGTGCGATGCCGTGCGCTCCCTTTCATTTAAGAGAACAAAACATTCGAGAGACACGGATGATCTTATGCGCGCTTTAACCCTGAGCCAGACAGATAGAAATAACTTTTCTGTTTGTCATTTGTCTCCgtttgtttggggtttttttttccaactcaCTCTATTCACTCCAAGTTTGCTCATTTTTCACGGCTTGCAAAGATGTGCGTGTGTGGTGCACTAGTGGTTGCCATTTTGTgagcaagtgtgtgtctgtgtgtgccctAAATTACTAGAGTTATTCTCTGCGACCTAAAGTTGACTTAAAcgtatttttttcattctaaaTCCAATATTAGTGGCACAGTCAAACTGAAGACCATCCTGAGGTGTCTCTTGCAAAGCCTGTTCAGGTCTCCCACTGAGGTGGAATGAATGGTTTATTACCCAGGCCTTGCAAGCTATTTGCTGTCTAATGGAGTATAAGTTGCTGAGGTCAACACATAGTTGGAGATCCAGCATAATGCAGTTGCGCCCTCATTATTGTCTAATTACACTGGCTGGGCATGGAGAGGGATTGATCGCTGCATTAGTCAGAACAGGGGTATTTTTGGCCATCAAAGTCTGCCGCTTCAATGCGTAATTGCGTAAATGaaacccattaaaaaaaaaaaaaaaaaaaacatccttctACCGTTTCACCAAATCCTGTcctgaacacacatacacacacagtcccacACAGAGGGATCCACCATACGCTGGGCAAAAGAAATGAGGCATACATTGTATGGATAAGCTCAACTGCTATTGTCTAAGGCTGTGTTCTATGTGATctatctgaaaaacaaaacaaaaaaaagaataaaaag
>XM_034308953.1
ttgttggtttttttggcTGGACAGCGCGCTGTGTTCTGGGAGAGAGGAATCTCAGAAAAGGCTGCTCGGTCGTGGAAGCCGGATGGTGGTGATCCAGCGCGCGCAGGCTTTCAGCAGAATATCAATTAGATGTTGAGCCGCAACGCTGCTTGTGGAAGCGTCGAAGAGATTGTTTGACGGAGGGAAAGAGCGCACAATGTCTTTGGGCATTGTTTCACCATGAACAGACTTGGAACTGAAGGTGTGAATTGTGAGATCGCTGGACGGATCAACAGGTCGCAAGCGTAAAGCGCATCTGGAGCCATGGCGCTCGTGTCGAGACGAATGCACCTCTCTGTTTTGTCTTTCTTACTCTTGTGGGCGCAAGCCCTGACGTTGAAAAACTTGAACTTTACGATCTCCGAGGAAAAGAACCAGGGTGTGATTGGAAACATTGCCAAAGACGCAGGGCTCGAGCTGAGAGAGCAGGGCAAAAAATCCAACTTCAGGGTGCTGGAGAATTCAGCTCCACACCTCATAGATGTGGACCCCGAGAGTGGGCTGCTCTTTATCAAGCAGAGGATTGATAGAGAAACACTGTGCAAACGAAACCCTAAGTGCCAGCTCTCTATGGAAGTGTTTGCCAATGACAAAGAGATCTACATGATTAAGGTAGACATACAGGACATAAACGACAATGCGCCCAGCTTTCCTTCCGATCAGATCGACATCGATATTTCAGAGAACGCCGCCCCTGGCACCCGCTTTCCCCTAGCTGCTGCCTACGACCCCGACACCCGGGAAAACGGCCTTAAAACATATCAAATCACACGAGATGATTACAGCATATTTTCTCTGGATGTGAAGTCCAGGGGAGATGGAACTAAATTTCCTGAGCTGGTCGTCCAGAGGTCTTTAGATAGAGAAGAGCGCAGCCATCATACTCTAATTATAACTGCCACAGATGGAGGGGAGTATCCGAAGTCAGGCACAATGCAAATCAATGTGAAAGTAATTGATTCAAATGACAATAGCCCCGTTTTTGAGCAGTCCTCTTATGTTGTGGAAATTCCTGAGAATTCTCCACCGGGCACAGTATTGATAGATTTAAATGCCACTGACCCTGATGAAGGAAGTAATGGGCAGGTTACCTATTCTTTGAGTTTTTATGGCTCGGATAGAATCAAAGAATTGTTCTCAATAGACCCCAAAACGGGTGTCATAAAGATTCAGGGGAAAATCGACTATGAGGAAAACCCAATTATAGAAATTGATGTGCAGGCAAAGGATCAAGGTCCGAATCCTGTTCCTGGCCATTGTAAAGTCACTGTTAAAGTGCTTGACAGGAATGACAACTGGCCATCAATAGGCTTTGTAGCGGTTCGGCAGGGGGCAGTTAGTGAAGCAGCACCCCCAGGGACTGTCATTGCTCTGGTGAGAGTGACTGACAAGGACTCTGGCCGCAATGGGCAGCTCCAGTGTAGGATTTTAGGCAACGTCCCATTCAGACTTGAGGAGAACTCTGACAATTTCTACACAGTGGTCACAGATAGACCGCTGGATCGAGAAGTGAAGGACGAATACAACATTACGATCATGGCCAAAGACAACGGTAACCCTCCACTGAATGCCACCAAATCTTTTACAGTCAAAATTCTGGATGAGAATGATAACGCACCAAGGTTCACTAAGATGGTCTACCTCCTTCAGGTGCCCGAAAACAACATCCCAGGAGAATATCTTGGTTCAGTTCTGGCCCATGACCCAGACTTGGGCCAAAATGGCACTGTTTCCTATTCCCTCCTTCCATCTAATGTGAGTGAGGAATCCATCACCACATACGTGAACATCAAACCAACCGATGGAGCCATTTATGCCCTAAGGAGTTTCAATTATGAGCAGACCAAATATTTTGATTTCAAGGTCCAGGCTAAGGACTCAGGTAATCCCCATCTGGAGAGTAACACTACAGTACGTGTGAGTGTGCTTGATGTCAACGACAACATCCCAGTCATTGTGCTGCCACTGTTGCAAAATGATACGGCAGAGATACACGTCCCACGCAATGTTGGCGTAGGCCATGTTATTACGACGGTGAGAGCAGTGGACAATGACTTTGGCGAGAGCGGCCGCCTAACCTACGAGATCTCGGATGGCAACGAGGAGCACCTGTTTGAGATTGATTCTGTGACGGGAGAGGTGCGGACAGCTCAGCCACTGTGGGAGGAGGTGTCTTCTGTGGTGGAGCTCATCATCAAAGTGACAGACCATGGAAAGCCCACGCTCTCCGCCATGGCCAAGCTCGTGGTCAAGGCATATTCGGGACCCCTGCCAGAGGGCGAGCCGCGGATCAACGCTGAGCAGCATGGGTGGGACGTGTCGCTCCCTTTGATTGTCACGCTCAGCGTCATTTCCGTCATGCTGCTGGCAGCCATGATTGCAGTCGCCGTCAAGTGCAAGCGGGAGAACAAGGAGATCCGCACCTACAACTGCCGCATCGCAGAGTACTCACACCCACAGCTGGGCAAGggcaaaaagaagaagataaaCAAGAATGACATCATGCTGGTGCAGAGCGAAGTGGAGGAACGTGACACCATGAACGTGATGAATGTAGTGAGCAGCCCCTCGCTGGCCACATCACCGATGTACTTCGATTACCAGACCCGCCTTCCCCTCAGCTCGCCCAGGTCTGAGGTCATGTACCTCAAACCGACAGCCAACAACCTCAGCGTTCCCCAAGGACACATGGGTTGCCATACGAGTTTCACGGGGCCTGTGACTAGCACCACAGAGACACCGGTTAACAGAATGTCGATAATTCAGACCGACAACTTCCCCACCGAGCCCAATTACATGGGGAGCAGGCAGCAGTTTGTTCAAAGCAGTTCCACGTTTAAGGACCCGGAGCGAGTGAGTCTGAGGGACAGTGGACATGGGGACAGTGACCAGGCCGACAGCGATCAGGACACCAATAAGGGCTCGTGCTGCGACATGTCCGCCAAAGAAGCACTGAAGATGAAGGCAACTGGACTCAAGCCTCAACCTCTTGAGCAGGAAGAGGACTGCGTGAACTGTACTGATGAGTGCCGGGTCCTGGGCCACTCGGACCGCTGCTGGATGCCCCAGTTCCCGGCACCAGGCATGGCGCAGGCTGAGGGTCTCGACTACCGCACAAACCTGTTCGTACCTGCAGGAATGGAGGCCGTGGCGACCGAGCCAGAGAGCTATGAGGCAACAGGCAACACCAGTGGCAAGAAGACCTTCTGCACTTTTGGCAAGGAGCGGCGTGAGCATGCCGTCCTGGTGGCCAACGTCAAGCCTTACCTCAAGGGCAAGCGTGCTCTCAGCCCACTGCTCCAGGAAGTGCCCTCAGCCTCGTGCAGCCCTACCAAGGGAACCAAAGGCGTTGCAGACGGAGCCGAGGTCAATCCCAGCACCAGCCACTATGAAGGGCCCAATGGACTTTACACTTCTCCTGGAAAGCAGAGTAGAGATCAAGGGTACTGTGCACTAACCGGCTCAGATCCTGTAGCCAAAGTGCTGTTGGAGGCACGTTCACGCATCAGCCAGGAAACGGCTAACGAGCCGGACGGAGCACTTGAGCATGGAGGAGGAGAGGCAAGCCGAGGAGGCATGGACGCCGAGCAGGTGGTCAGAGACATCGATAAACTTCTCCAGGACTGCCGAGGCAACGAGGCTGCAGTGGTCAGGAAGTGAACAGACTAATACACTgatgcagaaaatgaaaaagaagacaaacagTGTGAGAGGGCGAGAGTCTGTGAGCTTAGAAACACTCTCAAAGAGTGAGGTGCTCATGAGGTTTGACAGATTAGGACAGAAAAGAACTTTTGACAGACTGTCTCAAAAAAAAAGCCAGGTTTTCTGGACGCCATGTTGTTTTGGGGAGGGGGTTCTTAGGGAGTTTCAGATGTTGCTGTTTCTGGCTTCTTAGCAAGCTTTTTCTTCAAGTGCCCACCAGCTCTATACTTTCTTTCTGACTCGGAACGCCACAAACCGCAAGAAAAGGTTGATTCTGACAATCGCAACTGAAATGTAGAACACTCCAAATGCGGTTGGATCTCATGAAGACCGAACCACGCTCTTCTCTTTTCTGACTTTGTAATATCATTGTATGAAATACTGAATAATCTCTGATTATCTCTGATCTATGGGGAGGGGGAGGGGTGGTAACTGGGGTGCTTAATTAAGAAATGTTACCATTTCTTCACTCGCCATTTCTAGTCATATGTGTAAGCTGTGTTTCCTCCCATATATACGTGTATATGGAACATTCCAGATTGGTGAAACTGTTACTCCTTTCCTCATTGGTCCTTTGTGTGAACACTGTCGTCACCTGTCTTCTACTTGTCCCTTCTTTTAAGGTGACCTTCCACTTGTCCTACATTAAATTAAGGCAATCATAATTATGTATATTAGGGACATATTTCCTCGACtgtgaaaaaaatctatataaatatatagataatatatatatatatatatatatatacatatatgaacTTATGTATAGTGTCCAgatattaacaaaaatatttatacattttctaaaaaaagaagtggaaatcagaaaaagaaaagtgtactgATGCTGAAAATGCAGTTGTTAATGATATTTATTACACTGCAAAGGACACTGGTTCGAATTCCAAGAAAACGAAtgtcaaaaaaggaaaaaaaaaaaaaaggaaatgtccCTTCACATTTGTCCCTTATTCACAATATCATTTAATGTGCAAAATGTATCCAATTAATGTGTTTACATcgaaattacatatttttattgattttttctGCAATCTCTGTGCATATGAGCCAAATTGTTACGTGTACAAGagatatattgtgtattttattaaattaatatatagttGTGTTGCAATATACATGGGCTTATATTGTATTTGGCAACTGTTGCCTTAGTAGCCGTCAAACTCTGTGAGTTTCCTTTGCTGTTGGGTTTTGTTTTCTTCGTCgtcctttctctgtctgtgctCTTACTGAGCGAGCCGGCTACCGTACACCTGGGCACGCTAGCGGGGCTTTTTTTTACACACGCGTGTTCGAGCAAACACTTTCGCTTTAACTCGGTCAGAGCTTATTCAGCCAGCACATTTCTATCAAAATGAGACGAAACACATACAACTACAGTTTGATTACCTTTTTTGCAATGCTGAGATAAACTTACAGGGCAGCTATTTTTTAATTGTGACAAGTTCTTGtcatttggatttatttttctttctttctttttttattttttcaaatctaAGCCTGCCATTTCATAAAGCAGCGTGGAGTCCCTGGCTAACATTCTGTGATACTGCCTTACTCACTCAGAAAGCTCACATTGTTACTGTAGTGCACTTGACTACAAAGAGGACGGGGGGGATTCTTGAGAATGTGCTATCTTATTTTGTATATAAGGACTTTTGAGCGGTCTTTGTATTCGCttcatatatgtgtgttttcGTTATCGTGAGCCCATCACAATTCAGATGATATTTCATCGCAATTCACACCGGTTCTTTGTCTCGGACTGTGTGAAACTTGATAGCCAAGCAtctatttttctctttgctttgatgtttttttttttttttcctcgcttTTTTATCCGTCTGGAGCTTCACTGTAGCAGTAGAGGCAGAATTCAAATGACGCATTAATGTCAGGTCTGCAGTTCGAGCATTCACCGTAGCTTCTCTTTGTAAAcaacaaatgagaaaataattatttttgattcAGGAGAATACTGACTCCACTGCTTAAATATGTGgagtgaaaactttttttttcctaaaaaatgTAATGGCTGTAAAAGGAGGTAGCTGATCCAATATGGCCTGGTTTTGTTTCTTAAGTGGTGCTGGTCTGTGTCATGAACAGATAATGAGTGCTCATCAGCTTCCCATCTCTCCATTACTGAAATGCAAGACTTTCTTGTACCTGCCTCATCTTGACTGTGTGCTCGAGTGAACTGTTACACACCTCAGGACCTCAAAGAGCCCGTGACTGACTATTTATGACACCTGATGCAGTCACCTGAGGAACAACTTAAACTGCAGCGTACAAAATAGCCTCCTATTATCCTTCATATTCACATAGACATGATAGACAGAACTATTCAcatatttttgctttatatatttatttatctgccaAGAAAGcgctctttctgtttttttttttccttctctccctGTCTTGCAGTGGGTTTATCTACACCCAGGTGCAGAGATATAAGTTTGGCATCAAGGAGAAAACGAAACTTTGTGTTGGTTTCTaattgagtgttttttttcctgcccaAACACAGTGACGAGTCTGATATTTTTGACACCCTCGACATAACCTCAACAAATAATGAAAGGCGGCACGGCGGCTTGCGCTCAGAGCTCGAAGCGGCAACTGACACGAGCGTCTTCTCTCTTCCTTTGCACTCATCATTGTAGTGCGATGCCGTGCGCTCCCTTTCATTTAAGAGAACAAAACATTCGAGAGACACGGATGATCTTATGCGCGCTTTAACCCTGAGCCAGACAGATAGAAATAACTTTTCTGTTTGTCATTTGTCTCCgtttgtttggggtttttttttccaactcaCTCTATTCACTCCAAGTTTGCTCATTTTTCACGGCTTGCAAAGATGTGCGTGTGTGGTGCACTAGTGGTTGCCATTTTGTgagcaagtgtgtgtctgtgtgtgccctAAATTACTAGAGTTATTCTCTGCGACCTAAAGTTGACTTAAAcgtatttttttcattctaaaTCCAATATTAGTGGCACAGTCAAACTGAAGACCATCCTGAGGTGTCTCTTGCAAAGCCTGTTCAGGTCTCCCACTGAGGTGGAATGAATGGTTTATTACCCAGGCCTTGCAAGCTATTTGCTGTCTAATGGAGTATAAGTTGCTGAGGTCAACACATAGTTGGAGATCCAGCATAATGCAGTTGCGCCCTCATTATTGTCTAATTACACTGGCTGGGCATGGAGAGGGATTGATCGCTGCATTAGTCAGAACAGGGGTATTTTTGGCCATCAAAGTCTGCCGCTTCAATGCGTAATTGCGTAAATGaaacccattaaaaaaaaaaaaaaaaaaaacatccttctACCGTTTCACCAAATCCTGTcctgaacacacatacacacacagtcccacACAGAGGGATCCACCATACGCTGGGCAAAAGAAATGAGGCATACATTGTATGGATAAGCTCAACTGCTATTGTCTAAGGCTGTGTTCTATGTGATctatctgaaaaacaaaacaaaaaaaagaataaaaagcaaattaatacatttaa

Function

symbol description
pcdh17 Predicted to enable calcium ion binding activity. Acts upstream of or within axon extension; axon guidance; and camera-type eye photoreceptor cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; immature eye; retina; spinal cord; and spinal cord neural tube. Orthologous to human PCDH17 (protocadherin 17).

NR:

description
PREDICTED: protocadherin-17 isoform X1

GO:

id name namespace
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU220132 False 2111 lncRNA 0.40 1 22378893 22381003
XM_034308953.1 True 7322 mRNA 0.45 5 22312442 22381020

Neighbor

gene id symbol gene type direction distance location
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 542356 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 690165 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 697150 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 706528 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 753440 21554701 ~ 21559002 (+)
fam43a fam43a,LOC106573864 coding downstream 751947 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 788863 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 997661 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 1008050 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 1032009 23413029 ~ 23473569 (+)
G185940 NA non-coding upstream 291383 22020848 ~ 22021059 (+)
G185751 NA non-coding upstream 752063 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 823915 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 845504 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 865962 21444384 ~ 21446480 (+)
G185997 NA non-coding downstream 378 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 47838 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 174429 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 509264 22890284 ~ 22942348 (+)
G186301 NA non-coding downstream 518216 22899236 ~ 22903794 (+)
trnap-agg_1 NA other upstream 353483 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 1047387 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 1101903 21189248 ~ 21210539 (+)
G184979 NA other upstream 2161548 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 2440979 19865798 ~ 19871463 (+)
glrx2 glrx2 other downstream 1826856 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2182380 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3150725 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 3804842 26185862 ~ 26212115 (+)
G188164 NA other downstream 3825922 26206942 ~ 26210010 (+)

Expression


Co-expression Network