polr2l (polr2l)


Basic Information

Item Value
gene id polr2l
gene name polr2l
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26185862 ~ 26212115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU222712
GCACAGCAACCCGGAAGCGACGCAttttcagcgtgtgtgtgtgtgtttgtgtgttttctcgTCTTTTCTCGTCTTTTCTCGAAGCGTGAAGAAGGTGAAGAAAGGTTTTTTGAAAGATTTTTGCTCATATAGTCGGACTTGCAGAACTTCACTATGATCATCCCCATCCGCTGCTTCACCTGTGGGAAGATTGTAGGGAACAAGTGGGAGGCTTACCTGGGTCTCCTACAGGCAGAATACACAGAAGgAGACGCTCTGGACGCCCTGGGCTTGAAGAGGTACTGCTGTCGCAGGATGCTGCTCTCTCACGTCGATCTGATCGAGAAACTGCTGAACTACGCGCCGCTGGAGAAATAAGACTTAAATggcttcatctctctctTGAACACATCCATTCGTTACACGCACAGGACGCAGTGCAGTGCTCGTATTTCCTCTTctgatgttttataaataaagtagtAAAG
>TU222713
gtttgtgtgtgtttgtgtgTTTTCTCGTCTTTTCTCGAAGCGTGAAGAAGGTGAAGAAAGGTTTTTTGAAAGATTTTTGCTCATATAGTCGGACTTGCAGAACTTCACTATGATCATCCCCATCCGCTGCTTCACCTGTGGGAAGATTGTAGGGAACAAGTGGGAGGCTTACCTGGGTCTCCTACAGGCAGAATACACAGAAGgAGACGCTCTGGACGCCCTGGGCTTGAAGAGGTACTGCTGTCGCAGGATGCTGCTCTCTCACGTCGATCTGATCGAGAAACTGCTGAACTACGCGCCGCTGGAGAAATAAGACTTAAATggcttcatctctctctTGAACACATCCATTCGTTACACGCACAGGACGCAGTGCAGTGCTCGTATTTCCTCTTctgatgttttataaataaagtagtAAAG
>XM_026910854.2
ATTTTCCGTGAGCACAGCAACCCGGAAGCGACGCAttttcagcgtgtgtgtgtgtgtttgtgtgttttctcgTCTTTTCTCGTCTTTTCTCGAAGCGTGAAGAAGGTGAAGAAAGGTTTTTTGAAAGATTTTTGCTCATATAGTCGGACTTGCAGAACTTCACTATGATCATCCCCATCCGCTGCTTCACCTGTGGGAAGATTGTAGGGAACAAGTGGGAGGCTTACCTGGGTCTCCTACAGGCAGAATACACAGAAGgAGACGCTCTGGACGCCCTGGGCTTGAAGAGGTACTGCTGTCGCAGGATGCTGCTCTCTCACGTCGATCTGATCGAGAAACTGCTGAACTACGCGCCGCTGGAGAAATAAGACTTAAATggcttcatctctctctctctctctctctctctgtgtgtgtctctgtctctaaacCGTTCTGATTGTGTTCACTGCACTGCCTCCTGTGGCTTCTTTACTCTACTGAACACATCCATTCGTTACACGCACAGGACGCAGTGCAGTGCTCGTATTTCCTCTTctgatgttttataaataaagtagtAAAGACGACA

Function

symbol description
polr2l Predicted to enable zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in tRNA transcription by RNA polymerase III; transcription by RNA polymerase I; and transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2L (RNA polymerase II, I and III subunit L).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006356 regulation of transcription by RNA polymerase I biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006385 transcription elongation from RNA polymerase III promoter biological_process
GO:0006386 termination of RNA polymerase III transcription biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050434 positive regulation of viral transcription biological_process
GO:0032481 positive regulation of type I interferon production biological_process
GO:0006283 transcription-coupled nucleotide-excision repair biological_process
GO:0005829 cytosol cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03007 RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5

RNA

RNA id representative length rna type GC content exon number start site end site
TU222712 False 467 TUCP 0.48 4 26210559 26212109
TU222713 False 423 TUCP 0.47 5 26185862 26212109
XM_026910854.2 True 571 mRNA 0.47 3 26210548 26212115

Neighbor

gene id symbol gene type direction distance location
helz2a helz2 coding upstream 47243 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 90724 26083657 ~ 26095138 (+)
LOC113523928 ap2a2,LOC106562310,LOC106587467 coding upstream 123206 26039386 ~ 26062656 (+)
tollip tollip coding upstream 255273 25924180 ~ 25930589 (+)
trnar-acg_9 NA coding upstream 679367 25506423 ~ 25506495 (+)
LOC113524556 sdhaf2,LOC107685224 coding downstream 11702 26223817 ~ 26227916 (+)
LOC117598406 sdhaf2,LOC107685224 coding downstream 28957 26241072 ~ 26244720 (+)
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding downstream 209798 26421913 ~ 26429101 (+)
LOC117598404 LOC107716903 coding downstream 279002 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 302435 26514550 ~ 26517299 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 19070 26153529 ~ 26166792 (+)
G188184 NA non-coding upstream 21106 26161314 ~ 26164756 (+)
G188168 NA non-coding upstream 76014 26109623 ~ 26109848 (+)
G188127 LOC108271167 non-coding upstream 192459 25988798 ~ 25993403 (+)
G187970 NA non-coding upstream 235890 25941892 ~ 25949972 (+)
G188202 NA non-coding downstream 6816 26218931 ~ 26222921 (+)
LOC117598393 NA non-coding downstream 207491 26419606 ~ 26420373 (+)
LOC117598395 NA non-coding downstream 208259 26420374 ~ 26421499 (+)
G188395 NA non-coding downstream 215253 26427368 ~ 26575866 (+)
LOC117598394 NA non-coding downstream 217020 26429135 ~ 26436719 (+)
LOC113523924 nell1 other upstream 488990 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1617219 24563400 ~ 24568643 (+)
glrx2 glrx2 other upstream 1975099 24207876 ~ 24210763 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 3804842 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 4226903 21958888 ~ 21958959 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other downstream 48415 26260530 ~ 26352035 (+)

Expression


Co-expression Network