LOC117598438


Basic Information

Item Value
gene id LOC117598438
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23169883 ~ 23170911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308916.1
ATGTGTTCCAACCCTGTCCCCACCCCATCCCTGCATAGCCTCAAACACCATCCACCTGCTCCAACCCCGTCCCCACCCCATCCCTGCATAGCCTCAAACACCATCCACATTTTCCAACCCTGTCCCCACCCCGTCCCTTCATGGCCTCAACACCATCCACAGTTTCCAACCCCGTCCCCACCCCATCCCTGCATAGCCTCAACACCATCCACCTGCTCCAACCCTGTCCCCCTCATCCTTGCCCTGCCTCAACACCATCCACCAGCTCCAACCCTGTCCCCCCTCATCCTTGCCCTGCCTCAACACCATCCACCAGCTCCAACCCTGTCCCCACCCCGTCCCTTCATGGCCTCAACATTATCCACATTTTCCAACCCTGTCCCCACCCCGTCCCTTCATGGCCTCAACACCATCCACCTGCTCCAACCCTGTCCCCACCCCATCCCTGCATGGTCTCAACACCATCCACCTGCTCCAACCCTGTCCCCACCCCATCCCTGCATGGTCTCAACACCATCCACCTGCTCCAACCCTGTCCCCACCCCATCCCTTCATGGTCTCAACACCATCCACCGGCTCCAACCCTGTCCCCACCCCATCCCTTCATGGCCTCAACACCATCCACAGTTTCCAACCCTGTCCCCACCCGGTCCCTTCATGGCCTCAACACCATCCACATTTTCCAACCCTGTCCCCACCCGGTCCCTTCATGGCCTCAGCACCATCCACTGGCTCCAGCCCTGTCCCCACCCCATCCCTGCATGGCCCCAACACCATCTACACGCTCCAACCCTGTCCCCACCCCGTCCCTTCATGGCCTCAATTCCATCCACATGCTCCATCCCCACCCCATCCTTTCACAGCCCCAACACCATCCACATGCTCCAGCACCGTCCCTGCATGGTCTCAACACGATACAAATGCTCCAACCCCGTAATCCCTATTCGTTTCTGTGGAGTGTACCACTTTGAAGCCGGACTGGTTAAGATCTTAGAGATTGTTCTTGGTAAGGCGGAcagagacagttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308916.1 True 1029 mRNA 0.59 1 23169883 23170911

Neighbor

gene id symbol gene type direction distance location
fam43a fam43a,LOC106573864 coding upstream 34731 23132967 ~ 23135152 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 1399797 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 1547606 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 1554591 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 1563969 21561055 ~ 21605914 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 207770 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 218159 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 242118 23413029 ~ 23473569 (+)
dennd1b dennd1b coding downstream 664792 23835703 ~ 23926144 (+)
trnaq-uug_2 NA coding downstream 761955 23932866 ~ 23932937 (+)
G186435 NA non-coding upstream 50106 23118760 ~ 23119777 (+)
G186331 NA non-coding upstream 163854 23003569 ~ 23006029 (+)
G186304 col6a2 non-coding upstream 211497 22956296 ~ 22958386 (+)
G186325 NA non-coding upstream 215782 22953893 ~ 22954101 (+)
G186301 NA non-coding upstream 266089 22899236 ~ 22903794 (+)
G186538 NA non-coding downstream 164435 23335346 ~ 23352236 (+)
G186643 NA non-coding downstream 234593 23405504 ~ 23419593 (+)
G186699 NA non-coding downstream 305204 23476115 ~ 23476497 (+)
G186798 NA non-coding downstream 498107 23669018 ~ 23676568 (+)
G186814 NA non-coding downstream 541122 23712033 ~ 23714371 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 788863 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 1210924 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 1904828 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 1959344 21189248 ~ 21210539 (+)
G184979 NA other upstream 3018989 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 1036965 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 1392489 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 2360834 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 3014951 26185862 ~ 26212115 (+)
G188164 NA other downstream 3036031 26206942 ~ 26210010 (+)

Expression


Co-expression Network