G186814


Basic Information

Item Value
gene id G186814
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23712033 ~ 23714371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221123
ttgggTGTAAGCAAAGAGAGCGATGCACTGAGACATGTTCAGCAGCGCCAAATGTTGCGAAAAGTTCAGTTACATTCGCAGAGTGAaatctttactttttaaaaagtacttGGCCTGTGTATCATGAATATATCCACAACACACTGCGCTAATGAACATGACCCAGCTTTAAATGATCTGCAGCACCCTCTTTGTCAAGTTTTGCAGAGGCTTCATATGTAAACACATCACCATTAAGCACTACGACTAAAATCATATAGCGCTAGATGCACTATATACACACCTCAGCACTTCGGTGTGACGATTCTTCACCCTGACCCTCTGTCTCGGAGTTTAATATCAAGATAAATATGCTTCTAGGAGGCAACAGGAGGCAACTGTTATTGTGTTAACgttataaggaaaaaaaaaaaaaagttataaactGATTatagctaaataataataaacaaaaagtaaaCACTTAAAATGCTCTCGACTACTCTTGAAAACATTTTGCATGGATACTATCACAGCAAATCAATAATTCTTTAGATGCAAAAGTTCGGGTACACAGAAAGCTGTTATAACTGTAAAGAAACTCGGAGGCTTGTGGAACCCAGAATGGAAGTCAGAAGGTCATAAGCCACTCATTGAAAAGTGCACTGAATACGTTCGTAATGTAGACGAATGGGACGTCAGTGAAATGGAATACGACTACTTGAGCTTTTTGTAAGAATGACAAGTTATCTACTAACCAAGATGTGCAAGTCGACTGATCTGTGAGTGTACCTCCTACAGAGCTGAACATCTTTCAAGACGGAAAAACCTGCTGCTTATAAACGAGCCCAAACAAAcccctgccaaaaaaaaaaaaaagtaaaaacaaaaataaaacacctcaaaaaagaaaaaaaaaacaacaaaacagctcAACAGTCAACTAATTAGGCTGAAAACAGATTTCGCCTTATTGGGTATTGCCGGGCAAGCAGACTGAACGAGGCTCGGGTTTTGGTGTAGGTGAGAAAAGGCACTTAGCACGATTTATTGTGTTGAGGTTTACACTGACAACACAGTGTCTTGTCATACGTTTGTGAGATCAATGTatcaattgtttaaaaaaaaaaaaaaacagctcaaacAGCTGAAGTGATGCAATGTGCATTTGCATGATGATTATTCACATAAAGATCATCGAGctgatagatttttttattcatgttccTTCATCAGTCCTGGTCCATAATTGAATCAAAAATATTCCACGATTCTGGTTCTAGCTCTTCAGTGAGAgacagttgtttttttctaaaactgtataaaaggcttgtgtttttatcaaagcGATAAAACGTATTTGGGGATTCAGGCAGgcaaaagtgttttaaaaatagCCAGTCTTGGGACGTATGCTATAAATGACAAATGACGCCTAGTTTGTTCccttgtttctttaaaaaaaaatgcagaagtgCACGCTAAAGGCACTGGATTAGTTACAAAGCGCATGCAACCTGCAACATGTACATGATGACTTCATTCTCTTTTAATAGAACTACAAAACACAATTTAAGCCATTCAATCAGGGAAGCTTTTTCAGGGGAACGCGAGATTATTTTTATAGATACCAAGGGAGACTTTCAGTCTTTTTATAGGGTTTGTGAAGGAGTGTCATGGGACAGTTAGTTTCATttcatatggaaaaaaaaaagccatttacATTCAACAATCAGGGGTGTTGCAGCATCTGTACCAATATCCAAAAACCCATAACAGCAAGACACTTTAAGGCTTCAGTATTCCTTTGTGTGCAAGGCAAATTCtgtttggaagaaaaaaaaaaaaaagacgtttATAACcgttttgtgcatttttaatgttaatctCTACTTTTTATACTGTTATCTAATCTTTGGTTGTAAGTTGTGCATGCGtaagtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaataCACCTACTGTGATTCGGCCTCAGCATTACACACCACACAGAAGTAGAATTAACAGTCAATAATCATGTGATGACTTGCTAAAGCCACCTTGCACAAGTTTGGATTAAAGCTTCTCGTAGTAAAGAAGCAATCATATGATTGTAACATGAACCACGGAGCTGtaggagatttaaaaaaaatggctggcAAACATCATCCAGAAGTGGGCTATAGACAGGAGAAGCAGACGGAGGATGGATTCAGTTGGCCAGAGTCAGAGCGTGCATGTGCTTGGCGATTTCGTACACGTAGGTGATGTCAGGCCGCTTCTCCGGATCCGGGTTGATGCACATATCTACCAGCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221123 True 2319 lncRNA 0.38 2 23712033 23714371

Neighbor

gene id symbol gene type direction distance location
LOC113526144 LOC108270555 coding upstream 238464 23413029 ~ 23473569 (+)
kif14 kif14 coding upstream 301919 23389070 ~ 23410114 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding upstream 324357 23378681 ~ 23387676 (+)
LOC117598438 NA coding upstream 541122 23169883 ~ 23170911 (+)
fam43a fam43a,LOC106573864 coding upstream 576881 23132967 ~ 23135152 (+)
dennd1b dennd1b coding downstream 121332 23835703 ~ 23926144 (+)
trnaq-uug_2 NA coding downstream 218495 23932866 ~ 23932937 (+)
trnaq-cug_11 NA coding downstream 219761 23934132 ~ 23934203 (+)
trnaq-uug_3 NA coding downstream 220264 23934635 ~ 23934706 (+)
trnaq-uug_4 NA coding downstream 222646 23937017 ~ 23937088 (+)
G186798 NA non-coding upstream 35465 23669018 ~ 23676568 (+)
G186699 NA non-coding upstream 235536 23476115 ~ 23476497 (+)
G186643 NA non-coding upstream 292440 23405504 ~ 23419593 (+)
G186538 NA non-coding upstream 359797 23335346 ~ 23352236 (+)
G186435 NA non-coding upstream 592256 23118760 ~ 23119777 (+)
G186864 NA non-coding downstream 77549 23791920 ~ 23792127 (+)
G186868 NA non-coding downstream 81359 23795730 ~ 23800962 (+)
G186882 NA non-coding downstream 112305 23826676 ~ 23827902 (+)
G186949 NA non-coding downstream 438744 24153115 ~ 24203702 (+)
G186951 NA non-coding downstream 441409 24155780 ~ 24162236 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other upstream 1331013 22312442 ~ 22381020 (+)
trnap-agg_1 NA other upstream 1753074 21958888 ~ 21958959 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 2446978 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 2501494 21189248 ~ 21210539 (+)
G184979 NA other upstream 3561139 20149971 ~ 20150894 (+)
glrx2 glrx2 other downstream 493505 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 849029 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 1817374 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 2471491 26185862 ~ 26212115 (+)
G188164 NA other downstream 2492571 26206942 ~ 26210010 (+)

Expression


Co-expression Network