G33828


Basic Information

Item Value
gene id G33828
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26645020 ~ 26650272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU39879
ACAAGATGGAGATCAATTTAACAAGTGGAATGTGGAAACGTGGAAACAGTTCTAATCAGTGCAAAGGAAAGTGTCCTTACAGTGGAGACATGCTGATTTGAATGGCTTCAGGTCCAGGGTTGTCACAGCTGTTGTTGACCCATTCATAGGTAAAGATGGATATCTGCAtgaagtaaagaataaaacatgatggggcatgctgttataggaaaataattaatgaccgTGTGGTGTGATGGTGCCTTTAAcagcccaaagttgattattttcctatcacaccatgctccaaagtgttttattcctcttctagtgcagcaatttacaatttatgtGATAGCAGATCTAAACATTCActccctcgccagcctctctctctctctc

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU39879 True 381 lncRNA 0.41 2 26645020 26650272

Neighbor

gene id symbol gene type direction distance location
iqca1 iqca1,LOC108437680 coding downstream 163387 26430072 ~ 26481633 (-)
gbx2 gbx2,LOC107096023,LOC103389863 coding downstream 226723 26414166 ~ 26418297 (-)
ccdc80l1 ccdc80,LOC108273094,LOC107565956 coding downstream 392772 26243940 ~ 26252248 (-)
si:ch73-193c12.2 LOC108273213 coding downstream 426442 26212753 ~ 26218578 (-)
gpr180 gpr180 coding downstream 576128 26060455 ~ 26068892 (-)
nck2b LOC108273233 coding upstream 1809 26652081 ~ 26702789 (-)
dph3 dph3,LOC107559917,LOC107660145,LOC107748572,LOC108437844,LOC107738311 coding upstream 55258 26705530 ~ 26708778 (-)
LOC113538336 LOC108273089 coding upstream 109234 26759506 ~ 26765206 (-)
mrps9 mrps9 coding upstream 116618 26766890 ~ 26788038 (-)
pou3f3b LOC108272408,LOC108437843 coding upstream 155509 26805781 ~ 26808675 (-)
G33824 NA non-coding downstream 19016 26625360 ~ 26626004 (-)
G33823 NA non-coding downstream 20795 26623999 ~ 26624225 (-)
G33822 NA non-coding downstream 21458 26623331 ~ 26623562 (-)
G33821 NA non-coding downstream 21802 26622999 ~ 26623218 (-)
G33803 NA non-coding downstream 34262 26610550 ~ 26610758 (-)
G33830 NA non-coding upstream 400 26650672 ~ 26650936 (-)
G33939 NA non-coding upstream 125751 26776023 ~ 26820169 (-)
LOC113538529 NA non-coding upstream 515970 27166242 ~ 27166345 (-)
G34132 NA non-coding upstream 618027 27268299 ~ 27269120 (-)
G34154 NA non-coding upstream 654548 27304820 ~ 27307180 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other downstream 6482 26630829 ~ 26638538 (-)
slc19a1 slc19a1 other downstream 539345 26081149 ~ 26105675 (-)
LOC113538393 NA other downstream 737026 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 906203 25680090 ~ 25738817 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 3013007 23615454 ~ 23632013 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 1095852 27746124 ~ 27757546 (-)
LOC113538277 NA other upstream 1184541 27834813 ~ 27841597 (-)
G34533 NA other upstream 1192287 27842559 ~ 27852397 (-)
ube2o ube2o,LOC101886876,LOC104959255 other upstream 1207286 27857558 ~ 27895548 (-)
LOC113538331 pitpnc1,LOC108424775,LOC102779150 other upstream 1625941 28276213 ~ 28366271 (-)

Expression


Co-expression Network