nhej1 (nhej1)


Basic Information

Item Value
gene id nhej1
gene name nhej1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5239845 ~ 5255979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918678.2
GGAGAATgcatattttgtcttttttgtacGTTTATTTCTtgagaaacagaagagagaATCTCGAATGTCCTATATAAAACCAACTTTACCGCGGAACAGATTTGCCCGAAAACATATGTTTTCATACTAACTCAGCGGGGCTTACGATTAGCTTCGTTTGTAGAACCGATATTGACGGAAATGATCCGGTCCTGGCTTACTGTGTTAGCTCGCTTTCCCTAGCCGCCCCCCGTCCGCCAGCCTAAATTTCTACCCGAGCAATGAATATCAAAAACTTCGTTTGTCCAATCAAACAACATTGTTTTATAGCGCTCCAATGTGTGTAGTCTTTCatgctgcacattcatgcaagtagcatgaaataaataagaaacataaaaataagaGACACGGAACGATTTAGTGTAGGTTGGTGTTCCACTGAGGAAAAGTACAGAGGAGGACGGAACTTTCCCCACAACGTATGGAGAGTACAAGACACTCTGAGGGAGCTTTGTTGGCTTTGCCATGGGTGCCTGTGAATTTTGGGGGTTCCAAGTTGTTGGCCAAAGCCTGGTTTGGTGACACAGAATATCGATTGTTGCTGAGTGACCTGAACAGTGTTTGGGAGGAGGAGATGAGCACAAACAGCATCGAGAGACGTGCACAGGTTCTAAATAAGCGTCTAAGGGCTCCAGTGCACACATTTTTTGCTCACCTGCGCTCAGTGGCCTGGCCATGTCTCTCCAGAGAGTCGTATGAACAGAGCACAACCGTACATTTCCTTCTCAAGCATAAGGGGGAAGACCTAACTGTCAGACTCAAGAGTGAGCTGGGAGATGTACCATTCTATTGGGAATTCCAGTGCACCCCTGCCTCGGTAGCAGTGGTGTCCAGAGAGCTAGTGTGTCCCTTGTTGTCTATGACTCAAGTGCTGCATAGGCATGTTGGAGAACTAACTACTTTGCTGCTCAAGAAAGATGCTGAGATACAAGACTACAAAGAGAATGGAGCTGTGCTTAGCAGAGGTAGGCTTCAGACTGAGCCATTTGAGGAGGAGACATACAGAAGGAACTTCAACCAGAGCCTTCCCAAGATGTTGCATGACGGTCTGGAGTTTGACTCTGAGCTGCAGGACCTATATGTGTCCATATGTGCTGCAAGAAACACCCAGAAACGCAAGCGTTCTAGTGAATACAGCTCTGCTTCAGTAGACAGCTTTGTCCCTGACCAGGACCAGACCAGCTGTGCACCAACAGGCATGAGGCCTGCCTCTCCTGAGTCTAATCAAAATTATACAAGGCAGCAAGTAGAAGACACACAGTATGCTGACACCAAAAAGACTGTGAGACTCTTAcctgcttctgctgctgctgctgctcctcctgtAGTTACACCTGCAGACAGGTCAGTGAACcccaagaagaagaaagcagcAGGGCTCTTTCAGTGACAGTATGGTCCAAGAGTTGGATTTTTCTCCCCTAAAATTTTCTATACAATTCAGGAAATGATTAAACTATGAATTATTAACTGTCAATTTTCTGAAACACTGTGTGATTGATTAATTTTGttgctttgtatttttaataaattgttgtAGTGCATTA
>XM_034313875.1
GTTCGTCGggatgcttttctttgttaattaataGTCGAGCCTAGCTATTTAGTTTTGTAGCAAAATAGACACTTCCGACCttttgtttctctctatctACGTCCATATTTACTTATGAGACTGGGACAGTTTGCTTTTACCTATGACTGTAACATAGACTTCAAGTATGGAGAGTACAAGACACTCTGAGGGAGCTTTGTTGGCTTTGCCATGGGTGCCTGTGAATTTTGGGGGTTCCAAGTTGTTGGCCAAAGCCTGGTTTGGTGACACAGAATATCGATTGTTGCTGAGTGACCTGAACAGTGTTTGGGAGGAGGAGATGAGCACAAACAGCATCGAGAGACGTGCACAGGTTCTAAATAAGCGTCTAAGGGCTCCAGTGCACACATTTTTTGCTCACCTGCGCTCAGTGGCCTGGCCATGTCTCTCCAGAGAGTCGTATGAACAGAGCACAACCGTACATTTCCTTCTCAAGCATAAGGGGGAAGACCTAACTGTCAGACTCAAGAGTGAGCTGGGAGATGTACCATTCTATTGGGAATTCCAGTGCACCCCTGCCTCGGTAGCAGTGGTGTCCAGAGAGCTAGTGTGTCCCTTGTTGTCTATGACTCAAGTGCTGCATAGGCATGTTGGAGAACTAACTACTTTGCTGCTCAAGAAAGATGCTGAGATACAAGACTACAAAGAGAATGGAGCTGTGCTTAGCAGAGGTAGGCTTCAGACTGAGCCATTTGAGGAGGAGACATACAGAAGGAACTTCAACCAGAGCCTTCCCAAGATGTTGCATGACGGTCTGGAGTTTGACTCTGAGCTGCAGGACCTATATGTGTCCATATGTGCTGCAAGAAACACCCAGAAACGCAAGCGTTCTAGTGAATACAGCTCTGCTTCAGTAGACAGCTTTGTCCCTGACCAGGACCAGACCAGCTGTGCACCAACAGGCATGAGGCCTGCCTCTCCTGAGTCTAATCAAAATTATACAAGGCAGCAAGTAGAAGACACACAGTATGCTGACACCAAAAAGACTGTGAGACTCTTAcctgcttctgctgctgctgctgctcctcctgtAGTTACACCTGCAGACAGGTCAGTGAACcccaagaagaagaaagcagcAGGGCTCTTTCAGTGACAGTATGGTCCAAGAGTTGGATTTTTCTCCCCTAAAATTTTCTATACAATTCAGGAAATGATTAAACTATGAATTATTAACTGTCAATTTTCTGAAACACTGTGTGATTGATTAATTTTGttgctttgtatttttaataaattgttgtAGTGCATTA
>XM_034313879.1
AGAGTAGGAGAATgcatattttgtcttttttgtacGTTTATTTCTtgagaaacagaagagagaATCTCGAATGTCCTATATAAAACCAACTTTACCGCGGAACAGATTTGCCCGAAAACATATGTTTTCATACTAACTCAGCGGGGCTTACGATTAGCTTCGTTTGTAGAACCGATATTGACGGAAATGATCCGGTCCTGGCTTACTGTGTTAGCTCGCTTTCCCTAGCCGCCCCCCGTCCGCCAGCCTAAATTTCTACCCGAGCAATGAATATCAAAAACTTCGTTTGTCCAATCAAACAACATTGTTTTATAGCGCTCCAATGTGTGTAGTCTTTCatgctgcacattcatgcaagtagcatgaaataaataagaaacataaaaataagaGACACGGAACGATTTAGTGTAGGTTGGTGTTCCACTGAGGAAAAGTACAGAGGAGGACGGAACTTTCCCCACAACGATGTGGTACAGTCCTCTGTTCAGTCCTGGTAACCATCTCGGGTGATCCTCAATATGGAGAGTACAAGACACTCTGAGGGAGCTTTGTTGGCTTTGCCATGGGTGCCTGTGAATTTTGGGGGTTCCAAGTTGTTGGCCAAAGCCTGGTTTGGTGACACAGAATATCGATTGTTGCTGAGTGACCTGAACAGTGTTTGGGAGGAGGAGATGAGCACAAACAGCATCGAGAGACGTGCACAGGTTCTAAATAAGCGTCTAAGGGCTCCAGTGCACACATTTTTTGCTCACCTGCGCTCAGTGGCCTGGCCATGTCTCTCCAGAGAGTCGTATGAACAGAGCACAACCGTACATTTCCTTCTCAAGCATAAGGGGGAAGACCTAACTGTCAGACTCAAGAGTGAGCTGGGAGATGTACCATTCTATTGGGAATTCCAGTGCACCCCTGCCTCGGTAGCAGTGGTGTCCAGAGAGCTAGTGTGTCCCTTGTTGTCTATGACTCAAGTGCTGCATAGGCATGTTGGAGAACTAACTACTTTGCTGCTCAAGAAAGATGCTGAGATACAAGACTACAAAGAGAATGGAGCTGTGCTTAGCAGAGGTAGGCTTCAGACTGAGCCATTTGAGGAGGAGACATACAGAAGGAACTTCAACCAGAGCCTTCCCAAGATGTTGCATGACGGTCTGGAGTTTGACTCTGAGCTGCAGGACCTATATGTGTCCATATGTGCTGCAAGAAACACCCAGAAACGCAAGCGTTCTAGTGAATACAGCTCTGCTTCAGTAGACAGCTTTGTCCCTGACCAGGACCAGACCAGCTGTGCACCAACAGGCATGAGGCCTGCCTCTCCTGAGTCTAATCAAAATTATACAAGGCAGCAAGTAGAAGACACACAGTATGCTGACACCAAAAAGACTGTGAGACTCTTAcctgcttctgctgctgctgctgctcctcctgtAGTTACACCTGCAGACAGGTCAGTGAACcccaagaagaagaaagcagcAGGGCTCTTTCAGTGACAGTATGGTCCAAGAGTTGGATTTTTCTCCCCTAAAATTTTCTATACAATTCAGGAAATGATTAAACTATGAATTATTAACTGTCAATTTTCTGAAACACTGTGTGATTGATTAATTTTGttgctttgtatttttaataaattgttgtAGTGCATTA

Function

symbol description
nhej1 Predicted to enable DNA end binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within double-strand break repair. Predicted to be located in nucleus. Predicted to be part of DNA ligase IV complex and nonhomologous end joining complex. Orthologous to human NHEJ1 (non-homologous end joining factor 1).

NR:

description
non-homologous end-joining factor 1-like isoform X2

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006310 DNA recombination biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10980 NHEJ1, XLF; non-homologous end-joining factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918678.2 False 1589 mRNA 0.45 8 5239851 5255979
XM_034313875.1 False 1292 mRNA 0.45 8 5240319 5255979
XM_034313879.1 True 1647 mRNA 0.45 9 5239845 5255979

Neighbor

gene id symbol gene type direction distance location
LOC113530419 ccdc122 coding upstream 85418 5140401 ~ 5154427 (+)
wbp4 wbp4 coding upstream 112249 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 522572 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 547817 4651006 ~ 4692028 (+)
LOC113545978 NA coding upstream 579722 4660009 ~ 4660123 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 220771 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 266945 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 424087 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 633602 5889581 ~ 5948452 (+)
ywhaba ywhaba,LOC100305105,LOC108412308,LOC107584065,LOC107708121,LOC107595428 coding downstream 903358 6159337 ~ 6180525 (+)
G21903 NA non-coding upstream 29728 5209865 ~ 5210117 (+)
LOC117595874 NA non-coding upstream 321211 4917145 ~ 4918634 (+)
LOC113545969 NA non-coding upstream 326052 4911803 ~ 4913793 (+)
G21791 NA non-coding upstream 337845 4879209 ~ 4902000 (+)
G21771 NA non-coding upstream 405787 4830903 ~ 4834058 (+)
G21928 NA non-coding downstream 1623 5257602 ~ 5257827 (+)
G21973 NA non-coding downstream 73916 5329895 ~ 5330285 (+)
G21982 NA non-coding downstream 78669 5334648 ~ 5334864 (+)
G22032 NA non-coding downstream 179787 5435766 ~ 5437469 (+)
G22033 ahcy,LOC107729767,LOC107708051,LOC107666127,LOC107596784,LOC107685809 non-coding downstream 181574 5437553 ~ 5463156 (+)
G21901 NA other upstream 30981 5208346 ~ 5208864 (+)
G21835 NA other upstream 151267 5088134 ~ 5088578 (+)
spega speg other upstream 480200 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 888097 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 911985 4275073 ~ 4327860 (+)
mych LOC108272607 other downstream 237743 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 245666 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 461551 5717530 ~ 5756688 (+)
tmem74b NA other downstream 712219 5968198 ~ 5976002 (+)
abraa LOC107578753 other downstream 780735 6036714 ~ 6049905 (+)

Expression


Co-expression Network