spega (speg)


Basic Information

Item Value
gene id spega
gene name speg
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4754266 ~ 4759645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945633.2
CTAGTCACCAGACACAAAGGGAAAGAGGAGGAAGCAGAGAAGCGAATGAGTAGaggcagagaggaagagatttAAGCATCAGAAAATCCCATTTTAGCTTTGATTGCACTAAGCTTGGCCACTGCCCTTGGCTAGCTTTAATCTTTGTTCCTCTATCTCATTTCTTTATCTACCAGCCTGTTTTTCCTCTTGTCTCCTTTCTCTGCCTATTTTGACAGACAGGACAGAAAGGAAGAATGCAGTGGCTGCAAGCAGATAGACTTATGTTTTATTGAGACCAGGGATAGAAACAGTGACATCCAGCTCCTCCTGTGCCTGGAATTTTTGCTCAATTGGATTCCTGTCTTTAGTCAAAGGGTTTTGAGCTCTCTAAGATGcactggatttattttttaatatgcagTAGGTGGAGGCATGCTGACATTTGGGATGTTGGTAGCatccctctcctctcttctaTATCGAAGATATTGTTGAATGCGCTCACAAACTTCAAACTGATTTGAACTGCTGATGTATTTGGATGTCTTTCGAAGTTTACTCTGAGGCAAACCCTAAATTCAGTTCAGGTGCCACTCTTTGTCTCAACATATGGGGTGTTGCTTGTACTGCAGAGGAAATTACATTCATGTGGGGCTATGAAGAAAATCTGGTCCAAAAAAAGATTCCAGAGAGCTGGACACACTAACTGGATGTTTGGAAGACTTGCTCATGTTTTTCGCTTGTGCAGGAAGCAAAGCAATGATTCAGACAACACAGATGATGAAAACGGGGAAACCCAGGTCTCCATGGAGACAAAAGAAAGGTCTAGGGCCCCACAGGCTCAAGCAGTTAGGAGTCAGCTTTCAGGTGGTGGAAAGACAATGATTGCTCGTATCCTGACTCCATCCAATCGCCCCATAGTAGAAAGAGAGATTTTGGCGCTGGGTTCGAAAGCCCCAAGCCTACAAGACCCCTTCCAGTCTGGCAGGCAAGCAAATGCTGGGTGTGTTCAGAGCCCCCCAGTCAGACATCTGGGTGTGGAAGCCCTTGTTCGGGCCTCTCAGATCAGTGTGTACTACCCAGCGGTGGAGTCTGAGGAAAGCATGTCCTTAAACAGTGACTACTATGGCAGCGTGTTCAGCCTTTATCGACAAAGGACATTTTCTGTATACAGTGTCCAGGATTGAATACGAGTTCTTGTGATATCAGAGCACAAAGCTTTGTGGTTTAAATGGGCACaaacaaaatttattaaaactgtGGCAGCAGGGGCGTGGTCGAGTGtcagctgtggacagagaggaggcgggttgaactgttttttccccccctgtAACCagcgagcaagagagagacatagtAGAGACCTCTTGGCAGAACcggcaagacacacacacatgcacacgccaAGAAGTGTGAACTTGCCGGAGAGAAAGCTGTAAGGCCGGGACCAAGTCTTCCTCAAATCCCAGGTTTTAGCACCACTGTAGAGCCCCGGTGTGGGAGAAGTTGAGGAAAATTTTTCGAGACAGGCGGAATTTTAGCAGAGCTCTGGGCTCACATATATTCAGTCCCCGCTTTTCAGCGCACAAActcaacaaaatcaaaacactCAACGGAAACTGGTCTGTCCTGGACTCGCAGCTTTCGCTccatcaagttcaagttcacgctTCTCggcacgtgtatgtgtgtgtgtcgccaGTTCTGCCAAGTGGTCTCGCATTCTGTCTCTTGCTCGTGGGTTACAGGGGAAAACACAGttcaacccgcctcctctctgtccaGAGCTAACATTCGACTATGCCCCGGCtgccacaaaaacattttcatcttttgaACTTTACAATCCATCCCTTATTTGTCATGGTCTTTTAAGTTTTCCCCTTACATTAAGTTTTCCCTAGTCCTTAAATTTTTACCTTCCTTTGAATCCACTTGGTTTTGTTACTCATTTTTGGCAGTTTTGTGGTAGCATGCATCAATGGTTATCAGTATCAGTGGTTACTTTTTGCATGCTTTGCTGCATCAGTTTCAGTTGTATGTCACTGTTTGCATTTTGCTTTCTACAAAAACACaagtttttatttcaaaaccCTTATCTTTCACTTAAAGACTGCAGTGCAGCACTTCAGTATTCACTCTTTCATTGTCACAACATTACATTTCCCTCAATTTCCTCAAAATATTTTGACAAGATTAGAGCCTTTGAGGAACACAGACAGAGATCCAACACATCAAAAGTGTCCTTTTCAGGGTGCTCGTGGGTTGGATTCAGTGAAAAGGCATCTTTTAATTCCGAAGATGGTGCAAGTGAAATGGTTAAGAACAATGAGGCACTCAATGTCCATCTTCAAGCAGAGAGCCTCCTCACTGGAGGATCACCCCAGTTATGCCCATAGCAAATGCTCAGAAGAGCTTCAGTGGATCAAGAAACAGGTTGTGGGGCCTAATATGAAGAAATCCTTCACTACAGAGGATCTTGCTGACCCAGAACAGCCATTGTCCCAGAAACACAAATGCCCAAAAGAGCAAAGTCCTCTCTTCATGAAGAAGTGATTTGAGCACTTCCAAAGCCTCCAAGGCTTTGTTCTGCTTCCACATTCCCAAAGTCATttaagggaagaaaaaaaaatcactcccCATCATCCCTACCAAAACTGACCATCACTACAAAATAAGCCAAAGAAGAGCAAATGATAGTGTGTGATCAAAAAACCTCAAACAAACTAagcagaaaagagaagaaagcagCAATCAATGCCTGCAGAGCAAGAGGACTACTCTGATGATTCCTCCATGTCTGCAAAAGAGAGGGCTGAGTATATGAACTTCCCCTTAAGGACACTGGCAGCCGCTGGCTTTGAGATGACACTGCAGTGCATCATTGCAGGAAGCCCTTCACAAGGCAAGACTGCTTAGCTCTTTAGGccatttaaaattgtaaatgacCAAAACAATGTCATTTGTCACAAAAAATCTCACATTTTTAAGttgctaatgaagaattacATGATTAGTGTAGTGAATAGCTGAGTTTATGGCCCTGCTTTTAGTTCCCTCACTCCCTGATGGTATAAtaaagtctttatttttatctttcacacttttttcaaaTTAACATGACTTCTAAATTCATATGGTGGGCCAGATTAGCACATTTATCAGGCCGAACCCTGGCCTTCGGGCTGCATGCTTGACACCCCTGCTTTAAACCTTTGTATTTCCAAACCGTTCTTCAATGTGACTTGTATTTTATCGCACCACATGAAAGTCCCTTGCATACACTGTGAATGGAAATGGTGAATAGAGTGTCCAAAACCCATTACCTTCTGTGGGGAGCTTAAATTGCGCTATCAAGGTCTGTGTTTTAAATGGGCTGTAGTAGACttcaggaaggaaaaaaatgatttggacATACATTTATGGTTTGAGGC
>XR_004579614.1
CTAGTCACCAGACACAAAGGGAAAGAGGAGGAAGCAGAGAAGCGAATGAGTAGaggcagagaggaagagatttAAGCATCAGAAAATCCCATTTTAGCTTTGATTGCACTAAGCTTGGCCACTGCCCTTGGCTAGCTTTAATCTTTGTTCCTCTATCTCATTTCTTTATCTACCAGCCTGTTTTTCCTCTTGTCTCCTTTCTCTGCCTATTTTGACAGACAGGACAGAAAGGAAGAATGCAGTGGCTGCAAGCAGATAGACTTATGTTTTATTGAGACCAGGGATAGAAACAGTGACATCCAGCTCCTCCTGTGCCTGGAATTTTTGCTCAATTGGATTCCTGTCTTTAGTCAAAGGGTTTTGAGCTCTCTAAGATGcactggatttattttttaatatgcagTAGGTGGAGGCATGCTGACATTTGGGATGTTGGTAGCatccctctcctctcttctaTATCGAAGATATTGTTGAATGCGCTCACAAACTTCAAACTGATTTGAACTGCTGATGTATTTGGATGTCTTTCGAAGTTTACTCTGAGGCAAACCCTAAATTCAGTTCAGGTGCCACTCTTTGTCTCAACATATGGGGTGTTGCTTGTACTGCAGAGGAAATTACATTCATGTGGGGCTATGAAGAAAATCTGGTCCAAAAAAAGATTCCAGAGAGCTGGACACACTAACTGGATGTTTGGAAGACTTGCTCATGTGAAGTTTTTCGCTTGTGCAGGAAGCAAAGCAATGATTCAGACAACACAGATGATGAAAACGGGGAAACCCAGGTCTCCATGGAGACAAAAGAAAGGTCTAGGGCCCCACAGGCTCAAGCAGTTAGGAGTCAGCTTTCAGGTGGTGGAAAGACAATGATTGCTCGTATCCTGACTCCATCCAATCGCCCCATAGTAGAAAGAGAGATTTTGGCGCTGGGTTCGAAAGCCCCAAGCCTACAAGACCCCTTCCAGTCTGGCAGGCAAGCAAATGCTGGGTGTGTTCAGAGCCCCCCAGTCAGACATCTGGGTGTGGAAGCCCTTGTTCGGGCCTCTCAGATCAGTGTGTACTACCCAGCGGTGGAGTCTGAGGAAAGCATGTCCTTAAACAGTGACTACTATGGCAGCGTGTTCAGCCTTTATCGACAAAGGACATTTTCTGTATACAGTGTCCAGGATTGAATACGAGTTCTTGTGATATCAGAGCACAAAGCTTTGTGGTTTAAATGGGCACaaacaaaatttattaaaactgtGGCAGCAGGGGCGTGGTCGAGTGtcagctgtggacagagaggaggcgggttgaactgttttttccccccctgtAACCagcgagcaagagagagacatagtAGAGACCTCTTGGCAGAACcggcaagacacacacacatgcacacgccaAGAAGTGTGAACTTGCCGGAGAGAAAGCTGTAAGGCCGGGACCAAGTCTTCCTCAAATCCCAGGTTTTAGCACCACTGTAGAGCCCCGGTGTGGGAGAAGTTGAGGAAAATTTTTCGAGACAGGCGGAATTTTAGCAGAGCTCTGGGCTCACATATATTCAGTCCCCGCTTTTCAGCGCACAAActcaacaaaatcaaaacactCAACGGAAACTGGTCTGTCCTGGACTCGCAGCTTTCGCTccatcaagttcaagttcacgctTCTCggcacgtgtatgtgtgtgtgtcgccaGTTCTGCCAAGTGGTCTCGCATTCTGTCTCTTGCTCGTGGGTTACAGGGGAAAACACAGttcaacccgcctcctctctgtccaGAGCTAACATTCGACTATGCCCCGGCtgccacaaaaacattttcatcttttgaACTTTACAATCCATCCCTTATTTGTCATGGTCTTTTAAGTTTTCCCCTTACATTAAGTTTTCCCTAGTCCTTAAATTTTTACCTTCCTTTGAATCCACTTGGTTTTGTTACTCATTTTTGGCAGTTTTGTGGTAGCATGCATCAATGGTTATCAGTATCAGTGGTTACTTTTTGCATGCTTTGCTGCATCAGTTTCAGTTGTATGTCACTGTTTGCATTTTGCTTTCTACAAAAACACaagtttttatttcaaaaccCTTATCTTTCACTTAAAGACTGCAGTGCAGCACTTCAGTATTCACTCTTTCATTGTCACAACATTACATTTCCCTCAATTTCCTCAAAATATTTTGACAAGATTAGAGCCTTTGAGGAACACAGACAGAGATCCAACACATCAAAAGTGTCCTTTTCAGGGTGCTCGTGGGTTGGATTCAGTGAAAAGGCATCTTTTAATTCCGAAGATGGTGCAAGTGAAATGGTTAAGAACAATGAGGCACTCAATGTCCATCTTCAAGCAGAGAGCCTCCTCACTGGAGGATCACCCCAGTTATGCCCATAGCAAATGCTCAGAAGAGCTTCAGTGGATCAAGAAACAGGTTGTGGGGCCTAATATGAAGAAATCCTTCACTACAGAGGATCTTGCTGACCCAGAACAGCCATTGTCCCAGAAACACAAATGCCCAAAAGAGCAAAGTCCTCTCTTCATGAAGAAGTGATTTGAGCACTTCCAAAGCCTCCAAGGCTTTGTTCTGCTTCCACATTCCCAAAGTCATttaagggaagaaaaaaaaatcactcccCATCATCCCTACCAAAACTGACCATCACTACAAAATAAGCCAAAGAAGAGCAAATGATAGTGTGTGATCAAAAAACCTCAAACAAACTAagcagaaaagagaagaaagcagCAATCAATGCCTGCAGAGCAAGAGGACTACTCTGATGATTCCTCCATGTCTGCAAAAGAGAGGGCTGAGTATATGAACTTCCCCTTAAGGACACTGGCAGCCGCTGGCTTTGAGATGACACTGCAGTGCATCATTGCAGGAAGCCCTTCACAAGGCAAGACTGCTTAGCTCTTTAGGccatttaaaattgtaaatgacCAAAACAATGTCATTTGTCACAAAAAATCTCACATTTTTAAGttgctaatgaagaattacATGATTAGTGTAGTGAATAGCTGAGTTTATGGCCCTGCTTTTAGTTCCCTCACTCCCTGATGGTATAAtaaagtctttatttttatctttcacacttttttcaaaTTAACATGACTTCTAAATTCATATGGTGGGCCAGATTAGCACATTTATCAGGCCGAACCCTGGCCTTCGGGCTGCATGCTTGACACCCCTGCTTTAAACCTTTGTATTTCCAAACCGTTCTTCAATGTGACTTGTATTTTATCGCACCACATGAAAGTCCCTTGCATACACTGTGAATGGAAATGGTGAATAGAGTGTCCAAAACCCATTACCTTCTGTGGGGAGCTTAAATTGCGCTATCAAGGTCTGTGTTTTAAATGGGCTGTAGTAGACttcaggaaggaaaaaaatgatttggacATACATTTATGGTTTGAGGC

Function

symbol description
speg Predicted to enable protein kinase activity. Predicted to be involved in muscle cell differentiation. Predicted to act upstream of or within cardiac muscle cell development; in utero embryonic development; and respiratory system development. Predicted to be located in nucleus. Implicated in centronuclear myopathy 5.

NR:

description
PREDICTED: striated muscle preferentially expressed protein kinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945633.2 False 3419 mRNA 0.44 6 4754266 4759645
XR_004579614.1 True 3424 misc_RNA 0.44 6 4754266 4759645

Neighbor

gene id symbol gene type direction distance location
LOC113545806 NA coding upstream 36993 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 62238 4651006 ~ 4692028 (+)
LOC113545978 NA coding upstream 94143 4660009 ~ 4660123 (+)
igfbp5a LOC108273291 coding upstream 167070 4566734 ~ 4587196 (+)
LOC117599286 rabl3 coding upstream 310625 4442811 ~ 4443641 (+)
wbp4 wbp4 coding downstream 363075 5122720 ~ 5127596 (+)
LOC113530419 ccdc122 coding downstream 380756 5140401 ~ 5154427 (+)
nhej1 nhej1 coding downstream 480200 5239845 ~ 5255979 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 717105 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 763279 5522924 ~ 5538437 (+)
G21629 NA non-coding upstream 90887 4658214 ~ 4663379 (+)
G21577 NA non-coding upstream 227934 4525923 ~ 4526332 (+)
G21514 NA non-coding upstream 296420 4457272 ~ 4457846 (+)
LOC113545955 NA non-coding upstream 319530 4429407 ~ 4434736 (+)
G21475 NA non-coding upstream 412926 4341127 ~ 4341340 (+)
G21763 NA non-coding downstream 48478 4808123 ~ 4808427 (+)
G21771 NA non-coding downstream 71258 4830903 ~ 4834058 (+)
G21791 NA non-coding downstream 119564 4879209 ~ 4902000 (+)
LOC113545969 NA non-coding downstream 152158 4911803 ~ 4913793 (+)
LOC117595874 NA non-coding downstream 157500 4917145 ~ 4918634 (+)
trnah-gug_1 NA other upstream 402518 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 426406 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 1011960 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 1166623 3579748 ~ 3587643 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other upstream 1175958 3550225 ~ 3578308 (+)
G21835 NA other downstream 328489 5088134 ~ 5088578 (+)
G21901 NA other downstream 448701 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 734077 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 742000 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 957885 5717530 ~ 5756688 (+)

Expression


Co-expression Network