LOC113545969


Basic Information

Item Value
gene id LOC113545969
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4911803 ~ 4913793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404676.1
gtagggcatcaggatggatcaatACATCTAACACTGACATGGCAAGACATAGAGGTGTTAGAATCCATCCCCAAGGCTCTGAATCCACTCCAAGAGTTTAAAGATATGCTTTCTGGAGAGGCATATGTCAGTGTTTCCTATCTTAAGCTGGTACTTCACCTTTTGAGGACAAAGACTCTAACTGAAGATCAAGAGGACACAGATCTCACAAGGGCAATCAAATGCAGGGTCATTCAATACCTCCACTAGAAATATGATGACGCAGCCATTCAAGAACTCTTGGATGTTACATCACTGTCCTCACTTCAAAACAAACTACATCAGTCAAGACAACATCCCAGCCATAAAAACAAGAATGaagacagagatggaggaagCTGCAAGAAAGGAGAAGAGATCATGTGTCACAGAGCCACAGGATTTAGCAGCAGCCTCAACtgtaaaagcaaacaaacctgGCAGCTATTTCAAGATCCAGTGGAATCTGTTCATTTTAATGATGCTGTGGAAGCAGAGCTGAACAGCTATGTAATTACACCAACAACTGATGGAGAAGAGGATCCCCTGGCCTGGTGCAAACAGCACCAGGTTAACTTCCCCAGGCTGAGCAGGTTGGCTTGCTGATACCTGTGTGTTCCTGACACAAGTTCACTGTCAGAAAGACTCTTCAGTGCAGCAGGCAATATAGTAACATGTCAACAGTCATGCCTCAAACCAGAGAAGACCAATTCCACCAAAACTGCTTTGATTCCTGTCTGACCTGAGTGACTTCCAGAATCCTTGGAAAATTTAAAGcCATAGAAGTAGCATCTGGActggagagaaaggagagagaagtgtgggtgtgggtgtgacAACAGGCAGGCTATTTTACCACCACTCACCAACAAGACATTCAAAATGATGATTTTAAAGCGTTTTTGTTCTTAATAGTTCATACAGGTTGTTTACTGTGTATATTAGAGTTATTAAAACCAATCCAATGTAGGTAAGGTAAGATATGCTTGGTAATTGAATAACTCTGCTTAAAAATAGCCTACACCACGGCTTTCCCTTAATGGTTTTCGTTTATATAAAAAGGATCGGAATTTGATTGGCCTTAATATAGCTGATACTGATCAATTGAAATATGCTGTGATCGGCTCCAATGTATCTGATCAGGACATCCCTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404676.1 True 1173 lncRNA 0.42 4 4911803 4913793

Neighbor

gene id symbol gene type direction distance location
LOC113545806 NA coding upstream 194530 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 219775 4651006 ~ 4692028 (+)
LOC113545978 NA coding upstream 251680 4660009 ~ 4660123 (+)
igfbp5a LOC108273291 coding upstream 324607 4566734 ~ 4587196 (+)
LOC117599286 rabl3 coding upstream 468162 4442811 ~ 4443641 (+)
wbp4 wbp4 coding downstream 208927 5122720 ~ 5127596 (+)
LOC113530419 ccdc122 coding downstream 226608 5140401 ~ 5154427 (+)
nhej1 nhej1 coding downstream 326052 5239845 ~ 5255979 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 562957 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 609131 5522924 ~ 5538437 (+)
G21791 NA non-coding upstream 9803 4879209 ~ 4902000 (+)
G21771 NA non-coding upstream 77745 4830903 ~ 4834058 (+)
G21763 NA non-coding upstream 103376 4808123 ~ 4808427 (+)
G21629 NA non-coding upstream 248424 4658214 ~ 4663379 (+)
G21577 NA non-coding upstream 385471 4525923 ~ 4526332 (+)
LOC117595874 NA non-coding downstream 3352 4917145 ~ 4918634 (+)
G21903 NA non-coding downstream 296072 5209865 ~ 5210117 (+)
G21928 NA non-coding downstream 343809 5257602 ~ 5257827 (+)
G21973 NA non-coding downstream 416102 5329895 ~ 5330285 (+)
G21982 NA non-coding downstream 420855 5334648 ~ 5334864 (+)
spega speg other upstream 152158 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 560055 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 583943 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 1169497 3728652 ~ 3742306 (+)
LOC117599945 LOC108272174,LOC108262055 other upstream 1324160 3579748 ~ 3587643 (+)
G21835 NA other downstream 174341 5088134 ~ 5088578 (+)
G21901 NA other downstream 294553 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 579929 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 587852 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 803737 5717530 ~ 5756688 (+)

Expression


Co-expression Network