si:ch73-193c12.2 (LOC108273213)


Basic Information

Item Value
gene id si:ch73-193c12.2
gene name LOC108273213
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26212753 ~ 26218578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933519.2
CTAATACCCGGAAATCAGTTAGCATTTTAACACCTCCGGTTCCATCGTCCCGAAGTCAATGGGTTTTTGGTTGAATGCATGAAATAAGTTCCGGCAGGGGGCGACAGCGCGCTCGCTTTCTGCTGAATGAAGAGGAAAGCGAAGAAGacagcaacaaaacaacaataaaatggaGAGTGGAGTAGGCCTAACGTTAGAGGTTGGCTCCGTTACAGCCTTTAAATggacTGATGCGAACACAGCAGAGCTGATTGTGTGGCGCGTCAGTAATAACAGCTTGTTCACGGGGAAGAAGAACACCGCCCTGCGAGCTTTCGAGCTATTTGTGAAGGAGAAACGGCTGGAGGGGAAAGTGACACCAGCATGGGTGAAGAAGAAGTGGGAGAACTTAAGACAGAAATATAAGGATATCAAGAGCCTCAGTATGATGGGAGGTGACCCGCTAGTGGCTCCATGGAAGTGGTACGCCGTGATGGATCAGGCTCTGAGTGGCGAACTCACTGTGGCTCATTCCCTTCTGTCCAACCTGTCCAACCTGTCCAATCTGTCCAATCTATCCAACTTGTCCAGCTCATCCAGCCCCTTCCCTGTCCCCGTGTCCTCATCTGGCCAGGATGCTCCCCCTGCCAAGAAGAGGAAGGAGCAGTACTGGCTAGCTGCCCTGCAGGAGCTTGAGAGGAGGCAGGAGGAGCGTGAGAGGCGTGCCGCAgaaagggaggaggagagggagaggcgGGCAGccgaaagagaagaagagagggagagacgggCGGCTGAgcgagaagaggagagagagaggcaggctCTGGAGCGAGAGAAGAGGAGGGAGCAGGATCTGCTCTCCAGACAGGAGCGTTGGGAGAGGGAGCTGCAAgccagagaggaaaagagagagaaagagtacagagaaagagaggagcgGAGGGATAGAGAAGCCGCTGCGAGGGAGGACCGGCTGTTCAAGCTCCTTGAGACGTTCATGTCTAAACAATACAACACGCATTGAGCCATGTTGGTGTCTCAGAAATGTCTGCTTTCTACTAATAAATCGTATCCGGTTTTGTATCTCTCGTTGTTGTTTGCATCTCTTAGCTGGAGTCTTTTGGTACGGAAAAATAATTCGGTAAGTAAACTAACAATTCAGCCAGCTGCAGGCTCTTGATGTGTCttttaacatctttaaaaagCTCCCTGGATAAAAAGTTGACCCACCAATGGCAGCACGTTACTGTACGTTGTTAATAAGTTGTGCAACTGGACAAATGTTGTTTTAATGTAGCATATAACTGGATTGTCAGTTGTTGGCCAGACTGTGTTTCATGTCCAAGCAGAAAACATTATCACAGCCTAAGATGGCAACTGTAGGAGCCAAATCTGTGTAATCTGGTCAAATTTAACCCTGATATAACAAATCTAGCCAGATCTGGCCTAGATTTGTTTGATGAGCATAATGGAGCAGGACTGGCCTGCAAAATCTGATCTCTGTCCCATAGACAAAGATATCCTTAGGAAAGAAATGAGATGTATAgcctatttttgttttgttatgctTGGAAATTAAGCAGTACAGACCATGTCAGAGTCTAGCCAataattttaatgcaaaattatGTTTTTCCAGGTGCAAGACTTGTTGACACTGTGCAATACGGTGCTGCTGTTGGTCGATTGGTGTTGCggtgtaatttttttgtctggGGAACAAATTTACTAGCGCTCGAAACACTTCTCAAGACACATTGAAAATTGTTAGTATTCCTCTCTTTCTCAGCATTGTTTCTGAAAGAAAAGCCTTTGTTCTCATCAAAGGAtggattatatatttttattattgcacaAGCTCAACAGTTAGCAGCAAGTTTACTGACAGGAAAAACAGTAGACACATAAAACACTGCATATTTGCACTCACAGACACTGACCAACAGTGACAATCTCTTTCTTCACAGGCACCTTGTTAGCTTAAGCTACTGCAGTTTGTTGCATTGTCTGATTATATAACTGTTTGATTATATACTGTGTATCTACATCACAATTGACTTTTTTGGGGCTTGTACACAACCTGCTGGTAGGAAAAGACCAGTTTCTGTCagtaaacaaaatgtgaaataaatttcaTGTGTTTAATAGTAAAGCTTATGACATAGCTGATGATTCTGAA

Function

NR:

description
PREDICTED: putative uncharacterized protein DDB_G0271982 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933519.2 True 2161 mRNA 0.45 5 26212753 26218578

Neighbor

gene id symbol gene type direction distance location
gpr180 gpr180 coding downstream 143861 26060455 ~ 26068892 (-)
LOC113538391 NA coding downstream 394967 25811886 ~ 25817786 (-)
trim25l LOC108271643 coding downstream 399575 25795226 ~ 25813178 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding downstream 457405 25745383 ~ 25755348 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding downstream 538257 25662000 ~ 25674496 (-)
ccdc80l1 ccdc80,LOC108273094,LOC107565956 coding upstream 25362 26243940 ~ 26252248 (-)
gbx2 gbx2,LOC107096023,LOC103389863 coding upstream 195588 26414166 ~ 26418297 (-)
iqca1 iqca1,LOC108437680 coding upstream 211494 26430072 ~ 26481633 (-)
nck2b LOC108273233 coding upstream 433503 26652081 ~ 26702789 (-)
dph3 dph3,LOC107559917,LOC107660145,LOC107748572,LOC108437844,LOC107738311 coding upstream 486952 26705530 ~ 26708778 (-)
G33617 NA non-coding downstream 103093 26089378 ~ 26109660 (-)
G33621 NA non-coding downstream 134852 26077375 ~ 26077901 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding downstream 369421 25837298 ~ 25843332 (-)
G33508 NA non-coding downstream 427873 25710231 ~ 25784880 (-)
LOC117599130 NA non-coding downstream 550789 25658315 ~ 25661964 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 3885 26222463 ~ 26227188 (-)
G33697 NA non-coding upstream 20889 26239467 ~ 26242883 (-)
G33780 NA non-coding upstream 314051 26532629 ~ 26532905 (-)
G33782 NA non-coding upstream 315085 26533663 ~ 26533925 (-)
G33803 NA non-coding upstream 391972 26610550 ~ 26610758 (-)
slc19a1 slc19a1 other downstream 107078 26081149 ~ 26105675 (-)
LOC113538393 NA other downstream 304759 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 473936 25680090 ~ 25738817 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2580740 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2987205 23222293 ~ 23225548 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 412251 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 421255 26639833 ~ 26649379 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 1527546 27746124 ~ 27757546 (-)
LOC113538277 NA other upstream 1616235 27834813 ~ 27841597 (-)
G34533 NA other upstream 1623981 27842559 ~ 27852397 (-)

Expression


Co-expression Network