RNA id: XM_026933519.2


Basic Information

Item Value
RNA id XM_026933519.2
length 2161
RNA type mRNA
GC content 0.45
exon number 5
gene id si:ch73-193c12.2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26212753 ~ 26218578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAATACCCGGAAATCAGTTAGCATTTTAACACCTCCGGTTCCATCGTCCCGAAGTCAATGGGTTTTTGGTTGAATGCATGAAATAAGTTCCGGCAGGGGGCGACAGCGCGCTCGCTTTCTGCTGAATGAAGAGGAAAGCGAAGAAGacagcaacaaaacaacaataaaatggaGAGTGGAGTAGGCCTAACGTTAGAGGTTGGCTCCGTTACAGCCTTTAAATggacTGATGCGAACACAGCAGAGCTGATTGTGTGGCGCGTCAGTAATAACAGCTTGTTCACGGGGAAGAAGAACACCGCCCTGCGAGCTTTCGAGCTATTTGTGAAGGAGAAACGGCTGGAGGGGAAAGTGACACCAGCATGGGTGAAGAAGAAGTGGGAGAACTTAAGACAGAAATATAAGGATATCAAGAGCCTCAGTATGATGGGAGGTGACCCGCTAGTGGCTCCATGGAAGTGGTACGCCGTGATGGATCAGGCTCTGAGTGGCGAACTCACTGTGGCTCATTCCCTTCTGTCCAACCTGTCCAACCTGTCCAATCTGTCCAATCTATCCAACTTGTCCAGCTCATCCAGCCCCTTCCCTGTCCCCGTGTCCTCATCTGGCCAGGATGCTCCCCCTGCCAAGAAGAGGAAGGAGCAGTACTGGCTAGCTGCCCTGCAGGAGCTTGAGAGGAGGCAGGAGGAGCGTGAGAGGCGTGCCGCAgaaagggaggaggagagggagaggcgGGCAGccgaaagagaagaagagagggagagacgggCGGCTGAgcgagaagaggagagagagaggcaggctCTGGAGCGAGAGAAGAGGAGGGAGCAGGATCTGCTCTCCAGACAGGAGCGTTGGGAGAGGGAGCTGCAAgccagagaggaaaagagagagaaagagtacagagaaagagaggagcgGAGGGATAGAGAAGCCGCTGCGAGGGAGGACCGGCTGTTCAAGCTCCTTGAGACGTTCATGTCTAAACAATACAACACGCATTGAGCCATGTTGGTGTCTCAGAAATGTCTGCTTTCTACTAATAAATCGTATCCGGTTTTGTATCTCTCGTTGTTGTTTGCATCTCTTAGCTGGAGTCTTTTGGTACGGAAAAATAATTCGGTAAGTAAACTAACAATTCAGCCAGCTGCAGGCTCTTGATGTGTCttttaacatctttaaaaagCTCCCTGGATAAAAAGTTGACCCACCAATGGCAGCACGTTACTGTACGTTGTTAATAAGTTGTGCAACTGGACAAATGTTGTTTTAATGTAGCATATAACTGGATTGTCAGTTGTTGGCCAGACTGTGTTTCATGTCCAAGCAGAAAACATTATCACAGCCTAAGATGGCAACTGTAGGAGCCAAATCTGTGTAATCTGGTCAAATTTAACCCTGATATAACAAATCTAGCCAGATCTGGCCTAGATTTGTTTGATGAGCATAATGGAGCAGGACTGGCCTGCAAAATCTGATCTCTGTCCCATAGACAAAGATATCCTTAGGAAAGAAATGAGATGTATAgcctatttttgttttgttatgctTGGAAATTAAGCAGTACAGACCATGTCAGAGTCTAGCCAataattttaatgcaaaattatGTTTTTCCAGGTGCAAGACTTGTTGACACTGTGCAATACGGTGCTGCTGTTGGTCGATTGGTGTTGCggtgtaatttttttgtctggGGAACAAATTTACTAGCGCTCGAAACACTTCTCAAGACACATTGAAAATTGTTAGTATTCCTCTCTTTCTCAGCATTGTTTCTGAAAGAAAAGCCTTTGTTCTCATCAAAGGAtggattatatatttttattattgcacaAGCTCAACAGTTAGCAGCAAGTTTACTGACAGGAAAAACAGTAGACACATAAAACACTGCATATTTGCACTCACAGACACTGACCAACAGTGACAATCTCTTTCTTCACAGGCACCTTGTTAGCTTAAGCTACTGCAGTTTGTTGCATTGTCTGATTATATAACTGTTTGATTATATACTGTGTATCTACATCACAATTGACTTTTTTGGGGCTTGTACACAACCTGCTGGTAGGAAAAGACCAGTTTCTGTCagtaaacaaaatgtgaaataaatttcaTGTGTTTAATAGTAAAGCTTATGACATAGCTGATGATTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39619 lncRNA downstream 103093 26089378 ~ 26109660 (-) True G33617
TU39620 lncRNA downstream 106528 26089378 ~ 26106225 (-) False G33617
TU39625 lncRNA downstream 134852 26077375 ~ 26077901 (-) True G33621
TU39514 lncRNA downstream 369421 25837298 ~ 25843332 (-) True G33538
TU39470 lncRNA downstream 427873 25710231 ~ 25784880 (-) True G33508
TU39654 lncRNA upstream 3885 26222463 ~ 26227188 (-) True G33645
TU39710 lncRNA upstream 20889 26239467 ~ 26242883 (-) True G33697
TU39805 lncRNA upstream 314051 26532629 ~ 26532905 (-) True G33780
TU39807 lncRNA upstream 315085 26533663 ~ 26533925 (-) True G33782
TU39834 lncRNA upstream 391972 26610550 ~ 26610758 (-) True G33803
XM_034310195.1 mRNA downstream 107078 26090887 ~ 26105675 (-) False slc19a1
XM_026933605.2 mRNA downstream 107297 26086810 ~ 26105456 (-) False slc19a1
XM_034310194.1 mRNA downstream 107298 26090887 ~ 26105455 (-) False slc19a1
XM_026933604.2 mRNA downstream 107298 26090887 ~ 26105455 (-) True slc19a1
XM_026933130.2 mRNA downstream 143861 26060455 ~ 26068892 (-) True gpr180
XM_026933069.2 mRNA upstream 25362 26243940 ~ 26252248 (-) True ccdc80l1
XM_026933546.2 mRNA upstream 195588 26414166 ~ 26418297 (-) True gbx2
XM_026933141.2 mRNA upstream 211494 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA upstream 211494 26430072 ~ 26481633 (-) True iqca1
XM_034313781.1 mRNA upstream 414718 26633296 ~ 26635929 (-) False ecrg4b
XR_003403851.2 other downstream 107297 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 304759 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2580740 23616157 ~ 23632013 (-) False uap1
XR_004580156.1 other downstream 4681325 21463861 ~ 21531428 (-) False raver2
TU39875 other upstream 412251 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 421255 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 421255 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 421255 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 421255 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile