RNA id: XM_034310195.1


Basic Information

Item Value
RNA id XM_034310195.1
length 2670
RNA type mRNA
GC content 0.41
exon number 6
gene id slc19a1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26081149 ~ 26105675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAAATATAAGAATGTGATATCGGTTTGCGGTGAATCCGCTTCGGCTGAGCGACTCTCCCGGATAAAATCTAATAATCTCAGCAAATGGGAAACACTGCGAGGTCACGAACGAGATTACTCCAGTGCTCTCGTATTCGTATATGGCTGTACTGGTGCCTGTGTTTCTGCTGACTGACTACCTGCGGTATAAGCCTGTCTTGGTCCTGCAAAGCATGAGCCATGTCTCCATCTGGCTCCTACTACTGCTGGGCACCTCCTTGTTAGAGATGCAGTTCATGGAGTTCTTTTATGGCATGACGATGGCGGCCCGTGTGGCCTATTCCTCTTACATTTTTTCACTTGTGCCTGCAAATGTGTATCAGCGTGTGGCCAGTTACTCGCGCTCCTCTGTGCTGCTGGGTGTGTTTACCAGTTCAGTGACGGGCCAGCTGTGTATGTCACTGGCTGACATCACATACAACACGCTCAGTGCCATCTCACTGGGCTTCGTCTCTTTTGGCTTGTTGCTCTCCACCTGCTTGCCATGGCCAAAACGAAGTCTGTTTTTTAACCAGAACCACAGGCATGAGGAGGGACCTGCCACTCAGTCAGAACTGGACAAAATTAAACTAGATGAAGTGATTACAGAAGGTGAAAAAGCCTCAGCAGGtgtctgtaacagtcagataaCCTCCTCCAGCATGAACATTTTCATTCAGATGTTGAAGGAGATGCGCAATGTTGTGAAAGTCCCCAGCCTGAGACTGTGGAGCCTGTGGTGGGTGTTCAACTCCACTGGCTATTACCTGGTGTTGTTCTACGTGCATATCCTGTGGAACAAGTTGGATCCATCCACAGAGCAGAAGCATGTCTATAATGGAGGAGTCGAAGCTGCCTCAACTTTGCTTGGTGCGATCACGTCATTTGTGGCAGGATTTGTGAAGATCAGGTGGAAGGTCTGGTCGGAGCTGGTAATTGGGGTGATCACTGCAGCTCAGGCTGGTTTGCTACTTCTCATGGGTACCACCACCAACATCTGGGTGTGTTACATTGCCTATATTCTCTTCAGAGGCTTCTACCAATTCCTGGTTCCTATTGCTACttttcaGATTGCCTCTTCTCTCACTAAGGAGCTGTGTGCTTTAGTCTTTGGAATAAACACTTTCCTGGGGACGATCTTGAAGACTATAATTACGCTAATTGTGGTAGATAAGAGAGGCCTGGCTCTGCCAGTACACTCCCAGTTTTTTGTGTACTTCTTTTACTTCACCCTGCTGACGATGGTTTATTTGGGCTGTGCTGCATGGGTTATCACGCACCATTACCGCAATCAGAGGCGAGAGCAGGTTCCCACAGATGCAACTACACCAGTTGAGCTTAGCCCTGTGGAAAAAGATCCCTCGGAGAAGAAACCTCTCTCCAATGGATCAGATGTCAGGACCTGAAAATTAAGTGAATTCTACAGTGTTCATGGTGAGATTCTCTCACTTGAGTGTTTGGTTTTCTCTGTATGTCCTTGAGATTTCTCTCATGAGATTTATATGAATAACAATGCATCACTGAAACGCATAACAGAAAGATGCACTTTGTTTTAGTAACTCTGATGATCTGTGAATTTATTACAATAAGGACCTTGTCATCTCTAAATgaaattgcaaaaaaataaaatgcagaatttCACTTACTATGCATTACCAAAGGCTAAGGCTGAGAAATaagagttttttaaaaaaaatataggaaATAAATTGAAGATAACATCACTTGCATGCCTAACCTTGCTTAGCCATGGGAAATCATAATAGGTGGAAATCATTCATACCAAAATATTGAGACCTGCTGCCTAGTTTATGAAATTACTGTATGTAAAAACTTGTGTGCATCTATTCATTAAGACTTGGTAGTGCTgcattgtttaaatatattgCTGGAAGCAGGAAACCTCGCTGTCACAAGCAACAAGTAAAAAATTAGGTTACATTATGAAGCAAATATTTTGAAGGATGTCAATGATTTTATAAAGGAAAATGTCTGCTAAGGAATTATTTGTTTTCTCCCTGTCTTGTATAAGCCTTTTAGTTAAACTTTGCATAAATCCACTGTATCTACACCCACTTATCATATTTTAGTTTGCTGGTTAATAATTTGCTTTGGGAGTTTATTTTGAAACAGGGAACACCCATCAATGTGATGCAGAGGTCTATTTTATCTGTTATTACATAAGACTTGTTTGAATTTTGTTGATAATGGTGAAGAGCATAGACTTATTAATTGTCTGATCATTTCCCAGACTTACACAGTATGTATTAGTGGTTGAGATAGGAACACTAGCTGGGAAACTCATAAATACATGCTGTATACTAAACATtttagtttaatattaaaaagagTATTCTGTTAgtatttttaattcaaatttttttttaaattacttgtGGGATGATGTTCGTGAAATGCCTTAGCATGGTTGTCCAGGACCATTTTGCCCTGTAACTGGATGATTCCCTATAGAAATCTGCTGAATATCACTATATTTTGTCATGCGCCTGGGACCCTTCTATGTTGTCAGAATTGTCTTGCAATTTCTGGCCATGCatgtgtattttttccccctaagcTAAGATTGTACAGCTTTCTCTCCTATTTCTAAcacaagcaattaaaaaaagtagttcttttgttttcttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39625 lncRNA downstream 12986 26077375 ~ 26077901 (-) True G33621
TU39514 lncRNA downstream 247555 25837298 ~ 25843332 (-) True G33538
TU39470 lncRNA downstream 306007 25710231 ~ 25784880 (-) True G33508
TU39472 lncRNA downstream 352113 25732298 ~ 25738774 (-) False nbeal1
TU39435 lncRNA downstream 429196 25660913 ~ 25661691 (-) False LOC117599130
TU39654 lncRNA upstream 116788 26222463 ~ 26227188 (-) True G33645
TU39710 lncRNA upstream 133792 26239467 ~ 26242883 (-) True G33697
TU39805 lncRNA upstream 426954 26532629 ~ 26532905 (-) True G33780
TU39807 lncRNA upstream 427988 26533663 ~ 26533925 (-) True G33782
TU39834 lncRNA upstream 504875 26610550 ~ 26610758 (-) True G33803
XM_026933130.2 mRNA downstream 21995 26060455 ~ 26068892 (-) True gpr180
XM_026933431.2 mRNA downstream 182893 25900730 ~ 25907994 (-) True LOC113538393
XM_026933421.2 mRNA downstream 273101 25811886 ~ 25817786 (-) True LOC113538391
XM_026933420.2 mRNA downstream 279180 25795228 ~ 25811707 (-) False trim25l
XM_026933519.2 mRNA upstream 107078 26212753 ~ 26218578 (-) True si:ch73-193c12.2
XM_026933069.2 mRNA upstream 138265 26243940 ~ 26252248 (-) True ccdc80l1
XM_026933546.2 mRNA upstream 308491 26414166 ~ 26418297 (-) True gbx2
XM_026933141.2 mRNA upstream 324397 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA upstream 324397 26430072 ~ 26481633 (-) True iqca1
XR_004577321.1 other downstream 182893 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2458874 23616157 ~ 23632013 (-) False uap1
XR_004580156.1 other downstream 4559459 21463861 ~ 21531428 (-) False raver2
TU39875 other upstream 525154 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 534158 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 534158 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 534158 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 534158 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile