RNA id: TU39867


Basic Information

Item Value
RNA id TU39867
length 1828
RNA type TUCP
GC content 0.47
exon number 6
gene id si:ch73-23l24.1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26639833 ~ 26649379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAACAGTAACAAGGCAGTATAACCTGGTGATATGGAGGCACTACATATAGAGAGGACATGTGAAGTGCAAACAGAGCATTCCAGCCTTCAGTCTGTTCTCCGTCAGCGTCGTGGGTTAAAGAACAGAAACATCTCCAGAAACACACCAAGAGCTGCAGAGGTGGAATAAAGTGCTGCAGGGCCTCGTTTCTTGAATATTGACTGCATTTCACAAAATAAACTTTGAGTCAGATTGCATGCTGATGTGAGAGATCTCACTACAAACAGTAACAAGGCAGTATAACCTGGTGATATGGAGGCACTACATATAGAGAGGACATGTGAAGTGCAAATGCAAACAGAGCATTCCAGCCTTCAGTCTGTTCTCCGTCAGCGTCGTGGGTTAAAGAACAGAAACATCTCCAGAAACACACCAAGAGCTACAGAGGTGGAATAAAGTGCTGCAGGCAAGTTTCCAGGGCCTCGTTTCTTGAATATTGACTGCATTTCACAATACAAACTTTGAGCCAGACTACATGCTGATGTGAGAGATCTCACTACAAACAGTAACAAGGCAGTATAACCTGGTGATATGGAGGCACTACATATAGAGAGGACATGTGAAGTGCAAACAGAGCGTTCCAGCCTTCAGTCTGTTCTCTGTCAGTGTCGTGGGTTAAAGAACAGAAACATCTCCAGAAACACACCAAGAGCTGCAGAGGTGGAATAAAGTGCTGCAGGTAGAAATATCTCCAGAAACACACCAAGAGCTACAGAGGTGGAATAAGGTGCTGCAGTGAAGTGACCATGCCTCGCTTCTCACtagtcctgtgtgtgtttgcgctcGGACTCTTCTGCCTGTCAGGTGCTGAAGATAGCCAAGCTGAGTCCAGGGAAAAGCGGGACATGCCAAACTGGGCGCTGACCTCCTCGGACTTTTTCGGCTGGATTGAAGAGCTGCGCAATCACGCTGGCTATGACAAAATCGACGAGCTGGCCAGAACCTTCTGGGCTCATTTCCCCTCAGCTAGTCGCTTGGGCTACGATTCCCCAGCTCCTGAAGAATGATGACGTATGCGCTGTTTTTCTCTGCAATTACACTAATGCTGTCTAAACTGCTACCACTTTTCAGAAATTCCTGCCTATTTTGAAGTTCCATTAAAGATTGTCAAAATGTCTATGACATGCAAATGTCCAGTCACTTTATCTACCACTAGACAGCGAAGGCAAAGTATAAACGCtaaagagtgatttttttttttttttatttattaaaataaatagaatcaACATTGTAAAGCACACAATAAATATATGAGAAATGTGCTGCATGTCTCAATCTCTGCAATTCTTACATTGTAAATAGTAGGACAGTTTTTGTTGCTTCCATTTGGTCTGTTTAAGTAAACAGACTTCTTTAATTCATCCTCCTTGGGACTGCTGTGGCTATGGATACTGTATGTGAACCATATAGAGTTGAAAAGGTTGGCTGgtaaagaaaagtaaagaatgTGGCTTGAAGGCTAAGATAACATTATGGAGACGCTTCTTTCTTTCAGCCTCAGGCTGTCCACATATTTATCTGCTCATAGCTTCATCCATTTCTGCCACAGAGCCTTGTTTAAtcttagctgtttttttttcagtagtgcAGGATGCTAATTGGCTCACTAAGTTTACTAATTTTACTCCAAAGTCCAGTTCCAAATATGCAATAACCAACACATTATACCCTtattaataaggaataaaatatttcagagtgtgctgttacaggaatataatcaactatcacttacgttatagcagctataaacagcctaTTTTctctaataagacaaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39860 lncRNA downstream 13829 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA downstream 13943 26625360 ~ 26625890 (-) False G33824
TU39858 lncRNA downstream 15608 26623999 ~ 26624225 (-) True G33823
TU39857 lncRNA downstream 16271 26623331 ~ 26623562 (-) True G33822
TU39856 lncRNA downstream 16615 26622999 ~ 26623218 (-) True G33821
TU39881 lncRNA upstream 1293 26650672 ~ 26650936 (-) True G33830
TU40016 lncRNA upstream 126644 26776023 ~ 26820169 (-) True G33939
TU40233 lncRNA upstream 618920 27268299 ~ 27269120 (-) True G34132
TU40263 lncRNA upstream 655441 27304820 ~ 27307180 (-) True G34154
TU40268 lncRNA upstream 670392 27319771 ~ 27396460 (-) True G34159
XM_026933499.2 mRNA downstream 1295 26633468 ~ 26638538 (-) False ecrg4b
XM_034313781.1 mRNA downstream 3904 26633296 ~ 26635929 (-) False ecrg4b
XM_026933141.2 mRNA downstream 158200 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA downstream 158200 26430072 ~ 26481633 (-) True iqca1
XM_026933546.2 mRNA downstream 221536 26414166 ~ 26418297 (-) True gbx2
XM_026933017.2 mRNA upstream 2702 26652081 ~ 26702789 (-) True nck2b
XM_026933530.2 mRNA upstream 56151 26705530 ~ 26708778 (-) True dph3
XM_026933316.2 mRNA upstream 110127 26759506 ~ 26765206 (-) True LOC113538336
XM_026933012.2 mRNA upstream 117511 26766890 ~ 26788038 (-) True mrps9
XM_034310546.1 mRNA upstream 156402 26805781 ~ 26808675 (-) False pou3f3b
TU39875 other downstream 1329 26630829 ~ 26638504 (-) True ecrg4b
XR_003403851.2 other downstream 534377 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 731839 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 3007820 23616157 ~ 23632013 (-) False uap1
XR_004580155.1 other downstream 5108405 21463861 ~ 21531428 (-) False raver2
XR_003403858.1 other upstream 516863 27166242 ~ 27166345 (-) True LOC113538529
XR_003403833.2 other upstream 1098200 27747579 ~ 27757546 (-) False ndufs1
TU40716 other upstream 1185434 27834813 ~ 27841524 (-) True LOC113538277
TU40719 other upstream 1193180 27842559 ~ 27848178 (-) True G34533
TU40721 other upstream 1199462 27848841 ~ 27852397 (-) False G34533

Expression Profile