RNA id: TU39857


Basic Information

Item Value
RNA id TU39857
length 232
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G33822
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26623331 ~ 26623562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCATTCCAAAAGCTTCTGCTTGCGTTTCATTGAATAGTTCATAGTTGATTTCgaggtatgttttggatcattgtcgtGTTGCAGAAGCCAATCTCTTTTTAGCTACAGTTTCTTAACTGACTGCGTCAAATTTGCTTCcagaatttgctgatatttactggaatccattcttccatctaTCTGTGCAATGTTTCCTGTACCAATGGCTATCACACCACCCCAACGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39856 lncRNA downstream 113 26622999 ~ 26623218 (-) True G33821
TU39834 lncRNA downstream 12573 26610550 ~ 26610758 (-) True G33803
TU39807 lncRNA downstream 89406 26533663 ~ 26533925 (-) True G33782
TU39805 lncRNA downstream 90426 26532629 ~ 26532905 (-) True G33780
TU39710 lncRNA downstream 380448 26239467 ~ 26242883 (-) True G33697
TU39858 lncRNA upstream 437 26623999 ~ 26624225 (-) True G33823
TU39860 lncRNA upstream 1798 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA upstream 1798 26625360 ~ 26625890 (-) False G33824
TU39879 lncRNA upstream 21458 26645020 ~ 26650272 (-) True G33828
TU39881 lncRNA upstream 27110 26650672 ~ 26650936 (-) True G33830
XM_026933141.2 mRNA downstream 141698 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA downstream 141698 26430072 ~ 26481633 (-) True iqca1
XM_026933546.2 mRNA downstream 205034 26414166 ~ 26418297 (-) True gbx2
XM_026933069.2 mRNA downstream 371083 26243940 ~ 26252248 (-) True ccdc80l1
XM_026933519.2 mRNA downstream 404753 26212753 ~ 26218578 (-) True si:ch73-193c12.2
XM_034313781.1 mRNA upstream 9734 26633296 ~ 26635929 (-) False ecrg4b
XM_026933499.2 mRNA upstream 9906 26633468 ~ 26638538 (-) False ecrg4b
XM_034313783.1 mRNA upstream 16935 26640497 ~ 26646721 (-) False si:ch73-23l24.1
XM_026933017.2 mRNA upstream 28519 26652081 ~ 26702789 (-) True nck2b
XM_026933530.2 mRNA upstream 81968 26705530 ~ 26708778 (-) True dph3
XR_003403851.2 other downstream 517875 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 715337 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2991318 23616157 ~ 23632013 (-) False uap1
XR_004580159.1 other downstream 5091903 21463861 ~ 21531428 (-) False raver2
TU39875 other upstream 7267 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 16271 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 16271 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 16271 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 16271 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile