RNA id: XM_034313783.1


Basic Information

Item Value
RNA id XM_034313783.1
length 504
RNA type mRNA
GC content 0.49
exon number 4
gene id si:ch73-23l24.1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26639833 ~ 26649379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATGCAAACAGAGCATTCCAGCCTTCAGTCTGTTCTCCGTCAGCGTCGTGGGTTAAAGAACAGAAACATCTCCAGAAACACACCAAGAGCTACAGAGGTGGAATAAAGTGCTGCAGTGAAGTGACCATGCCTCGCTTCTCACtagtcctgtgtgtgtttgcgctcGGACTCTTCTGCCTGTCAGGTGCTGAAGATAGCCAAGCTGAGTCCAGGGAAAAGCGGGACATGCCAAACTGGGCGCTGACCTCCTCGGACTTTTTCGGCTGGATTGAAGAGCTGCGCAATCACGCTGGCTATGACAAAATCGACGAGCTGGCCAGAACCTTCTGGGCTCATTTCCCCTCAGCTAGTCGCTTGGGCTACGATTCCCCAGCTCCTGAAGAATGATGACGTATGCGCTGTTTTTCTCTGCAATTACACTAATGCTGTCTAAACTGCTACCACTTTTCAGAAATTCCTGCCTATTTTGAAGTTCCATTAAAGATTGTCAAAATGTCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39860 lncRNA downstream 14493 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA downstream 14607 26625360 ~ 26625890 (-) False G33824
TU39858 lncRNA downstream 16272 26623999 ~ 26624225 (-) True G33823
TU39857 lncRNA downstream 16935 26623331 ~ 26623562 (-) True G33822
TU39856 lncRNA downstream 17279 26622999 ~ 26623218 (-) True G33821
TU39881 lncRNA upstream 3951 26650672 ~ 26650936 (-) True G33830
TU40016 lncRNA upstream 129302 26776023 ~ 26820169 (-) True G33939
TU40233 lncRNA upstream 621578 27268299 ~ 27269120 (-) True G34132
TU40263 lncRNA upstream 658099 27304820 ~ 27307180 (-) True G34154
TU40268 lncRNA upstream 673050 27319771 ~ 27396460 (-) True G34159
XM_026933499.2 mRNA downstream 1959 26633468 ~ 26638538 (-) False ecrg4b
XM_034313781.1 mRNA downstream 4568 26633296 ~ 26635929 (-) False ecrg4b
XM_026933141.2 mRNA downstream 158864 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA downstream 158864 26430072 ~ 26481633 (-) True iqca1
XM_026933546.2 mRNA downstream 222200 26414166 ~ 26418297 (-) True gbx2
XM_026933017.2 mRNA upstream 5360 26652081 ~ 26702789 (-) True nck2b
XM_026933530.2 mRNA upstream 58809 26705530 ~ 26708778 (-) True dph3
XM_026933316.2 mRNA upstream 112785 26759506 ~ 26765206 (-) True LOC113538336
XM_026933012.2 mRNA upstream 120169 26766890 ~ 26788038 (-) True mrps9
XM_034310546.1 mRNA upstream 159060 26805781 ~ 26808675 (-) False pou3f3b
TU39875 other downstream 1993 26630829 ~ 26638504 (-) True ecrg4b
XR_003403851.2 other downstream 535041 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 732503 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 3008484 23616157 ~ 23632013 (-) False uap1
XR_004580159.1 other downstream 5109069 21463861 ~ 21531428 (-) False raver2
XR_003403858.1 other upstream 519521 27166242 ~ 27166345 (-) True LOC113538529
XR_003403833.2 other upstream 1100858 27747579 ~ 27757546 (-) False ndufs1
TU40716 other upstream 1188092 27834813 ~ 27841524 (-) True LOC113538277
TU40719 other upstream 1195838 27842559 ~ 27848178 (-) True G34533
TU40721 other upstream 1202120 27848841 ~ 27852397 (-) False G34533

Expression Profile