RNA id: TU40016


Basic Information

Item Value
RNA id TU40016
length 1449
lncRNA type read_through
GC content 0.38
exon number 2
gene id G33939
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26776023 ~ 26820169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGCTCACAGAACCTTTATTGTTCACGCACCAGCACTGTGTACACAGATTACAAAGTCCACAAAAGGAACTATAAGAAAAAACGGCAGGAAAGAAATGTTGGAAAGCATTGCACAAGACATGACAGAGAGGTCAGGTGGGATTTTGTCCTTGAAGGTTTCACCTGCAGTTGCCAGTCTCTGTGTTGACGCAGTTACAGTAAAGGAAAAATTagactgtattattattattattactgttaatatactgtacatatacatttatttctgtatttatgtatcTGTCCTGCATAATATGGAAAATTTGATCTATATTCTGATATTACTGCTTTAGAAACTATAAATGTAACAGTCATGCACGGTCTTGAAGTGTTATTGCAGCCATTGAGCATGTTTTACTCTGAGTAATTCAGTTATAGTCAAAAGGAATGAAAATGGAAcggcataaataaaataaaaccataaaaaaaaacacatgcttcTCTTCCAGGTATTATGTCGAGCCATAGGAAATGAACACTCTGTGCTTAATCTAATGTAATCATGTAAAAGTATGTGATCTGAATATACTATATAAAGAAGTTGTAGgaggaattttttaaaatagaaacaaacCAACCAATTTTGACTACTAGGCCTTACATGTAGCTGAGTTAGACTGAGCCCTTCATCAGCACTTAATCTCTTGCTAAATGTGAAACatttatttggaaaaatgttcttccatcattttttcccaacctctgataattaatatttatctaTCAGTGTTTTGCTGATCTCATCCACTTtatcagtgctgttgaattgaaaaaaaaaatatctaatccCGTATTTACTTCCCCAGACGTTTTTCTGTCTCCTGATAATCTTTTTATGCGTGTGTTGCATTGTTGCCCGAGTCTTCAGCACGATTAGTGCGGCTCAGTCTTGGCGGGCACTCTGAGTTGTCAGAGCCTTTGATCTGAGCTGTCTCCGTAATCACTTCAAAAAGTGTAGATGGCACCATGAGGGCTTTGCAAATGTGCCTCCGTACTTTCTGCAATCTTTAAGCGCTTGATGCCATGTGTTTAAGGCCTGACGTCCATGATGAAAGAGAGCCCCAGAGCGGCACTCTTGACACCAGCCTGACTATAATAACTAGCAACGGCTGCTTTTGGGAGCTAATTTTAATATCCTACCTGGTCATCTAATGTGCAtattccctctttctctgtccgtCTTCATAAAGAGACAAATGTGAGGTCCTTTCTTTCGCCTTCTTTGCGCTCTACAAGCGTGGAGAAACAAACGCCTTTGCTTTCTTCTTTAACAataacatttgcatattttttataGTCTCTCAAAGAAAAATAGCCAGCAGGAGAAGGGCTGCAGTGCTAGTGTGAGCTGAAAacggaagtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39881 lncRNA downstream 125087 26650672 ~ 26650936 (-) True G33830
TU39879 lncRNA downstream 125751 26645020 ~ 26650272 (-) True G33828
TU39860 lncRNA downstream 150019 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA downstream 150133 26625360 ~ 26625890 (-) False G33824
TU39858 lncRNA downstream 151798 26623999 ~ 26624225 (-) True G33823
TU40233 lncRNA upstream 448130 27268299 ~ 27269120 (-) True G34132
TU40263 lncRNA upstream 484651 27304820 ~ 27307180 (-) True G34154
TU40268 lncRNA upstream 499602 27319771 ~ 27396460 (-) True G34159
TU40380 lncRNA upstream 762372 27582541 ~ 27582825 (-) True G34253
TU40450 lncRNA upstream 906138 27726307 ~ 27726506 (-) True G34309
XM_026933316.2 mRNA downstream 10817 26759506 ~ 26765206 (-) True LOC113538336
XM_026933530.2 mRNA downstream 67245 26705530 ~ 26708778 (-) True dph3
XM_026933017.2 mRNA downstream 73234 26652081 ~ 26702789 (-) True nck2b
XM_034313783.1 mRNA downstream 129302 26640497 ~ 26646721 (-) False si:ch73-23l24.1
XM_026933499.2 mRNA downstream 137485 26633468 ~ 26638538 (-) False ecrg4b
XM_026933554.2 mRNA upstream 367231 27187400 ~ 27191642 (-) True tmem182b
XM_026933656.2 mRNA upstream 528964 27349133 ~ 27378633 (-) True ptprnb
XM_026933657.2 mRNA upstream 528964 27349133 ~ 27378627 (-) False ptprnb
XM_034298347.1 mRNA upstream 560422 27380591 ~ 27389267 (-) False dnpep
XM_026933102.2 mRNA upstream 560422 27380591 ~ 27388560 (-) True dnpep
TU39868 other downstream 126644 26639833 ~ 26649379 (-) False si:ch73-23l24.1
XR_003403858.1 other upstream 346073 27166242 ~ 27166345 (-) True LOC113538529
XR_003403833.2 other upstream 927410 27747579 ~ 27757546 (-) False ndufs1
TU40716 other upstream 1014644 27834813 ~ 27841524 (-) True LOC113538277
TU40719 other upstream 1022390 27842559 ~ 27848178 (-) True G34533
TU40721 other upstream 1028672 27848841 ~ 27852397 (-) False G34533

Expression Profile