RNA id: XM_034298347.1


Basic Information

Item Value
RNA id XM_034298347.1
length 1812
RNA type mRNA
GC content 0.49
exon number 15
gene id dnpep
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 27380591 ~ 27389267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgcaaactctgcacacacaagTCTTTCATCATGAAAACCTCAAAGGAAGCTGTTCAGAATGCTGCAAAGGAGTTTCTTAATTTTGTGAATCGTGGAGTTTCACCATATCATGTGGTTGAAGAGTGCAAGACTCGTCTTTTAAAAGCTGGCTTTACAGAGCTAAAGGAATCCGAACACTGGGATATCAAACCAGcaaacctgTACTTTTTGACACGGAACTACTCCACAATCATTGCCTTTTCTGTGGGCGGCCTGTACAAACCAGGCAACGGCTTCTCCATCATCGGAGCCCACACAGACAGCCCCTGTCTGAGGGTAAAGCCACGCTCCAAGAAGACGAGGTCAGGCTGCCTGCAGGTAGGTGTAGAGTGCTACGGTGGAGGAATCTGGAACACATGGTTCGACCGGGATCTGACTGTTGCCGGCCGTGTCATGGTCAGGAATGGAGATAAGCTGGTGCATCGTCTCGTGCATGTCCAGCGGCCCATCTTGAGGATCCCCCATCTGGCCATTCACCTGCAGAGAGACATCAACGACTCGTTTGGCCCTAACAAGGAGAACCACCTcGTGCCTTTCCTGGCCACTGCCATTCAGGAGGAGCTAGAGACAGGTgcttctgctgcttcttctaGTGATCCCTGCAATGCAGGATCTACAGCAGAGAAACACCACCCGGCTCTGGTCCAGCTGCTCTGTGATGAGCTGAAGGTCAAGTCTGATGTGCTGCTGGATTTTGAGCTGTGTCTGGCAGACACACAGCCAGCGGCACTGGGAGGTGTGTATGAagagtttattttttctcctcGTCTGGACAACCTTCACAGTTGCTTCTGTGCTCTGACCGCTCTGATAGACTCTAGTACTACTGCCTCTCTCTCGGAAGAGCCAAATATCCGTATGGTCACTCTGTATGACAACGAAGAGGTAGGGTCAGAGAGTGCTCAGGGTGCCATGTCAAACCTGACGGAGCTTGTTCTGCGTCGCCTGGCAACCAGCAAAGAAAATCTGACTGCCTTTCAGGAGGCCATGCCAGTGTCCTTCATGATCAGCGCTGATATGGCTCATGCTCTGCATCCAAACTACCAAGATAAGCATGAAGAGAATCACAGACCAGCTTTCCATAAGGGTCCAGTCATAAAATTTAACAGCAACCAGCGATACGCCACCACTGCTGTAACTGCCTCCATCTTACGGGAGATTGCCAGGAGGATGGATGTGCCGCTTCAGGACGTGATGGTGCGGAACGACAGTCCCTGTGGAACAACCATTGGCCCCATCCTGGCTGCTCGGCTGGGAATTCCGGTGCTGGACATTGGCGCTCCGCAGCTGGCCATGCACTCCATCAGAGAGATGTGCTGCACCTCCGGAGTCCTCCAGACCACAACTCTATTCAAGGGCTTCTTCGAGCACTTCCCCTCCGTGAGAAACATGGTTGTGGTGGACTAGGCTGTGCTGCTGTGACACAGCATAACTAGACAGGTGACCAGAGGTGTATCCAAATGAGGAAAATCAGAATCTGTCCATCTCATCTTAAAACTGTTAATAATCCAAAGTACATCATTAAATTTGTAAAAGGGTTCTACTCCAGAGTGAAAGCCCAAAAGAACCTTTTTGGCTGCTAGTTAGAACCTTTATTTCAAGAACACAATCCTATATTTTCTCCAAGCACAGTACTTATATGAACCTAGAAGGATTTCAACACTGTTTTACTCACTAACTGTCTACTTGGTTGCTAAATCTTTGGCTGTTTTCCATTACAAGCAGAATGGAGTTgttaaagacaataaaaaaaaactatgtctCTGTTCTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40263 lncRNA downstream 73411 27304820 ~ 27307180 (-) True G34154
TU40233 lncRNA downstream 111471 27268299 ~ 27269120 (-) True G34132
TU40016 lncRNA downstream 560422 26776023 ~ 26820169 (-) True G33939
TU39881 lncRNA downstream 729655 26650672 ~ 26650936 (-) True G33830
TU39879 lncRNA downstream 730319 26645020 ~ 26650272 (-) True G33828
TU40380 lncRNA upstream 193274 27582541 ~ 27582825 (-) True G34253
TU40450 lncRNA upstream 337040 27726307 ~ 27726506 (-) True G34309
TU40691 lncRNA upstream 413876 27803143 ~ 27804305 (-) False G34514
TU40694 lncRNA upstream 413876 27803143 ~ 27804389 (-) True G34514
XR_003403830.2 lncRNA upstream 447416 27836683 ~ 27841597 (-) False LOC113538277
XM_026933656.2 mRNA downstream 1958 27349133 ~ 27378633 (-) True ptprnb
XM_026933657.2 mRNA downstream 1964 27349133 ~ 27378627 (-) False ptprnb
XM_026933554.2 mRNA downstream 188949 27187400 ~ 27191642 (-) True tmem182b
XM_034310546.1 mRNA downstream 571916 26805781 ~ 26808675 (-) False pou3f3b
XM_034310544.1 mRNA downstream 571916 26805781 ~ 26808675 (-) True pou3f3b
XM_026933175.2 mRNA upstream 14028 27403295 ~ 27432003 (-) True tmem198b
XM_026933159.2 mRNA upstream 74836 27464103 ~ 27466116 (-) True cdk5r2a
XM_026933523.2 mRNA upstream 79758 27469025 ~ 27476091 (-) True wnt6a
XM_026933490.2 mRNA upstream 116245 27505512 ~ 27543486 (-) True asic4b
XM_026933438.2 mRNA upstream 195455 27584722 ~ 27594557 (-) False gmppab
XR_003403858.1 other downstream 214246 27166242 ~ 27166345 (-) True LOC113538529
TU39869 other downstream 731212 26639833 ~ 26649379 (-) False si:ch73-23l24.1
XR_003403833.2 other upstream 358312 27747579 ~ 27757546 (-) False ndufs1
TU40716 other upstream 445546 27834813 ~ 27841524 (-) True LOC113538277
TU40719 other upstream 453292 27842559 ~ 27848178 (-) True G34533
TU40721 other upstream 459574 27848841 ~ 27852397 (-) False G34533
TU40747 other upstream 505650 27894917 ~ 27895548 (-) False ube2o

Expression Profile