RNA id: XM_026933017.2


Basic Information

Item Value
RNA id XM_026933017.2
length 2759
RNA type mRNA
GC content 0.47
exon number 4
gene id nck2b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26652081 ~ 26702789 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgatGAGAGGATCCATACAAAAGAGGACTAACAGTTTTTTAAAGCTTATTCATTAAAATTAGCATTAAAAACCAACTTTTAAGACAATACTTAGAGTTAAATTATTTCTGACAGTGTACAAAATTGAGGCAAGTATGCACACAGCCAAGCACGTGCCGTAGATAAAACGTTCATTAAAAGGCgcttttaaaatatcttttttattgTATGATGTGGCTTGTGGTTTGACGCTTGAACAGCGCGCGTGACAGTCCTGTCCGGGCGGCGATGACGTCACGCCGCAGCCCTCGGCGaaggagcagcagcagaagcagcagcagaagcagtAGAAGAGGATAGAGGACGAAACTAGGGGAGGCCTGCTGAAACAACCGAGAACACAAGCTCCATACACTTTCATAATAAAACTTTCGCATGTTGTGGAGCAGCAGCAGAGCAGGAAGTTCCACTCCCGCTGTATTCGCTGTCCGAAAGCGAGCCGCAAGCGTGACTCCATGAAAGATGTCAGAGGAGGTGATTGTGATCGCCAAGTGGGACTACTCGGcacagcaggagcaggaactTGACATCCGGAAGAACGAGCGCCTGTGGCTCCTAGACGACTCGAAGACGTGGTGGCGTGTCCGCAATGCAGCCAACCGCACAGGCTACGTGCCATCCAACTATGTGGAGAGGAAAAACAGCCTAAAGAAGGGGTCACTGGTGAAGAACCTCAAGGACACTCTGGGTCTGGGTAAGACTAAGCGGAAGCCGAGCACAGATGCTGAGTGCCCACCGAACGGCGTCGGTGCAGGAGCAGAGCGTATCTACGAGCTGCACACAGCGGCAGTGGCCAAGTTTGCATACACAGCGGAGCGTGAAGATGAACTGAGCCTGGCGAAGGGCACACGTCTGCTGGTGCTTGAGAAATGCAGTGATGGCTGGTGGCGCGGCCGCTGCAGTGACGGCCGGGTCGGCTGGTTCCCCTCCAACTACGtccaggaggaggaggatgatgaggaggatgaggaagaggcaGGCGTGGGTGACGGGCAGTGCTCACGAGCATTGCACAAGGTGCAGACGCTTTACCCCTTCAGCTCAGCCACAGAGGAAGAGCTGAATTTTGATAAAGGAGAAATCATGGAGGTGTTGGAGAAGCCCGAGAATGACCCCGAGTGGTGGAGGTGTAAAAACAGTCAAGGCCAAGTGGGCCTTGTGCCCAAAAACTATGTGACGGTGCTGGAAGATGGGTCGGCACAAGGGGGAGGGGCCAGCAGTTTCACAGCCCATCCTTTGCAGCATGCAGGCCCTGCCCACACAGGCAGATTCGCTGGGAAGGTATGGTACTACGGCAGCGTGACGCGGCACCAGGCTGAATGCACACTAAACGAGAGGGGAGCCGAGGGAGACTTCCTAGTGCGGGACAGCGAGTCCTCTCCAAGTGATTTCTCCATCTCCTTGAAGGCATCAGGCAAGAACAAGCACTTCAAGGTGCAGTGCGGCGAGGGTGTGTACTGCATCGGGCAGCGGCGTTTCAATGCTATGGACGAGCTCATCGAGCACTACAAGAAAGCACCCATTTTTACCAGTGAGCACGGAGACAAGCTCTACCTTGTCAAACCCCTGCAGTGACCTTCCAGCCAAAAATGAGCCTTGAGAACCTAAATAGACCTCACACTGAGCCAAGCCTCCTTACTGTTCTCCTTGGTGGTCAGTTCTCACCAGCAAGTGGGCAACAGAGTGCCAACGCAAGCAGCCGGGCAGTGCCATTGTCCTTTATTTTTGAATCAttgtcatttcctgtttacttcTTCATATATTTTGTCCTTGGTTATAATAATCTTTCCATTTAAGTGTTGAGAGATAATAAGAGGTACACACTTTTGTTGCTGCAATTCAGATTTTACACAGCAAACAGACTTAAATTCACAAGAAGTAgccttttaattttattttttttaataatatgattTGACGGTACAATATGGAATATTCTGAGCCTTCACAAGGCAGTCTGTATCAGAGGAGCTACGGGATTATCTGTTCACACTTACTGCCAAAAAGAGCCAATTTGTGGCACACAGATACTgactgccccctgctggacacACAGATGCATGGACTCACACAAGGGAGGTCTGTTTATGAGATGAGATGAATGTCAGATGCTCAACCAAATGTGCCACACACTCGTTAAATGTATCACTCCACATTATTCCAACCCAAAATTGACAATAGCCTGAGTCGTACTATATCTGTATGGGTATCTTGTATAATTACAAGAGAGCTTATTCTGTACACGCGTTTAATTTCCCAGCTTTTTTAAAGTATGTGTCTGAATGTAAGAGCATTGTTATTTAAATCTGTGTCTATTTAAACTAGAGCATTAGGTGCATATAGGAGGAATTTGCTAAGCACTGTACCAATGACCGTTATGTTGGAAGttgaaatacattttgtttaattaaacattttgcaaaaTAACGGTAAAATGTCTCAGGCTTTTATCATTGACAGGGTCATGTATAGAGAGTTAGAGTAAAAAAACTTACCATCAAATATGTTTCATGAGGCTCAGTTAGTTCAGTGCAGAAAGCTTTGCACAACCTTCACTACAGACCAGGAGTCAACTCAGATTTGTAAaggtggttatgttttgttttgtaatggtGCTTCACTTTTGATTAGCGTAACAGACTCTGAACATATGAGATGCATTTGTCCTGAATTTGATGCAGGGAGAATAAATCCATGCTTCCCTGTCcattcattattaa

Function

GO: NA

KEGG:

id description
K19862 NCK2, GRB4; NCK adaptor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39881 lncRNA downstream 1145 26650672 ~ 26650936 (-) True G33830
TU39879 lncRNA downstream 1809 26645020 ~ 26650272 (-) True G33828
TU39860 lncRNA downstream 26077 26625360 ~ 26626004 (-) True G33824
TU39861 lncRNA downstream 26191 26625360 ~ 26625890 (-) False G33824
TU39858 lncRNA downstream 27856 26623999 ~ 26624225 (-) True G33823
TU40016 lncRNA upstream 73234 26776023 ~ 26820169 (-) True G33939
TU40233 lncRNA upstream 565510 27268299 ~ 27269120 (-) True G34132
TU40263 lncRNA upstream 602031 27304820 ~ 27307180 (-) True G34154
TU40268 lncRNA upstream 616982 27319771 ~ 27396460 (-) True G34159
TU40380 lncRNA upstream 879752 27582541 ~ 27582825 (-) True G34253
XM_034313783.1 mRNA downstream 5360 26640497 ~ 26646721 (-) False si:ch73-23l24.1
XM_026933499.2 mRNA downstream 13543 26633468 ~ 26638538 (-) False ecrg4b
XM_034313781.1 mRNA downstream 16152 26633296 ~ 26635929 (-) False ecrg4b
XM_026933141.2 mRNA downstream 170448 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA downstream 170448 26430072 ~ 26481633 (-) True iqca1
XM_026933530.2 mRNA upstream 2741 26705530 ~ 26708778 (-) True dph3
XM_026933316.2 mRNA upstream 56717 26759506 ~ 26765206 (-) True LOC113538336
XM_026933012.2 mRNA upstream 64101 26766890 ~ 26788038 (-) True mrps9
XM_034310546.1 mRNA upstream 102992 26805781 ~ 26808675 (-) False pou3f3b
XM_034310544.1 mRNA upstream 102992 26805781 ~ 26808675 (-) True pou3f3b
TU39865 other downstream 2702 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other downstream 2702 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other downstream 2702 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other downstream 2702 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39869 other downstream 2702 26639833 ~ 26649379 (-) False si:ch73-23l24.1
XR_003403858.1 other upstream 463453 27166242 ~ 27166345 (-) True LOC113538529
XR_003403833.2 other upstream 1044790 27747579 ~ 27757546 (-) False ndufs1
TU40716 other upstream 1132024 27834813 ~ 27841524 (-) True LOC113538277
TU40719 other upstream 1139770 27842559 ~ 27848178 (-) True G34533
TU40721 other upstream 1146052 27848841 ~ 27852397 (-) False G34533

Expression Profile