RNA id: XM_026933546.2


Basic Information

Item Value
RNA id XM_026933546.2
length 2349
RNA type mRNA
GC content 0.53
exon number 2
gene id gbx2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26414166 ~ 26418297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGACAGAGAGCTGGAGGAAAGTCAGTGCGCTTCTTCCCGGTTCATAGAAAGTTAAAGGAACTGGAGGTGGACAACAGCGTCTAAGATACAACGAAAGGTTCCTCGGTgaatggcacttttttttttgcgcaaATTGACTTTTTAACATTAAGTATTCTGCTCCTCGCATGGAGAAAAGACCTGAAACGCAGGCGCAGTGATTTCACTCAGGAACCGGACCAGCGGACAGACTGTGGCGGGATTACCGGCGCTGCGGCTGGGACCGGCGCTcacctctgctgctgctgctgctgctgctgcttctgcttctgctgctgctgcttctgcttctgctgctgctgctgctgcggaGACACAGGAACCTTCTTCCTCTGTGCTTTTGGCTCTCacctgactgacacacacactcacacacacacactcttacacacactcacacacacgcacacactcacacacacacactcacactcacacacactttgtcgGGATTGTAACGCGTTAAAGTGATTGTTGCGTGTGGATTTGGTGCGGGTGAGAGTTGCGGGAGAGCCTGTGACTCAGTGTAAACTTCTTGAACTTGTCAGTGTGTAGTAGATGAGCTTATGAGTGCGGCGTTCGGTTCGTCCTTCGCGATGATGCAGCGTCCGGTGGGAAACACCACTGCCTTCAGCATCGACTCGCTCATCGGCGGCTCCCAGCAGCCCAGTCCGGGACACTTCGTGTACACCGGCTACCCCATGTTCATGCCTTACCGCTCCGTGgtgcttcctcctcctcctcctcctcctcctcctcctggtCTGACTCAGGCGCCTCCTCATCATCAGCTCGCCGCTTTACCGGCCGCTATACCGGGCGCTTTCTGCTCCAGTCTGGCGCAGGGCATGGCGCTCACCTCCACGCTCATGGCCAGCCTGCCCCAGCACCCGGAAGCGGCCCGGAAGTTCGGCACGCAGGCGCTGCACGCGGCCTTTGACAAATCCCATGAGATCCGACTGGACGCGGAAGACGGCAAAAGTTTCCTGAGCAAAGAGACCGCTGCGCTTCTGCCCTTCCACGATGAGCCTCTGCAGTCCGCTACAGTACGAGGTCACGGCAAAGACGATGCCAAGGAAGACGAGTGCACCAGGAAGGACGAGAGCTTCTCCATGGACAGCGACCTTGACTACAGCTCGGATGACAACATGGCTCCTGCATCCAACCCTCTGTGTGCCAAAGAGGACGGCGAGGCGAGCGCGGGGCTGGAGGAGAGCGCGCGCTCCGGGAGCGGCGCCTCGGGCGGGAAGAACCGCAGGCGGCGGACGGCGTTCACCAGCGAGCAGCTGCTGGAGCTGGAGAAAGAGTTCCACTGCAAGAAGTACCTGTCACTGACAGAACGCTCGCAGATCGCGCACGCCTTGAAACTCAGCGAGGTGCAGGTGAAAATCTGGTTTCAGAACCGCAGGGCGAAGTGGAAGCGCGTGAAGGCGGGGAACGTGAACACCAAGGCGGGAGAGCCGTCCCGAAACCCCAAAATAGTGGTCCCCATTCCCGTGCACGTGAGCCGCTTCGCCATCCGGAGCCAGCACCAGCAGCTGGAGCAAGCCAGACCGTGACATGCCTGGGCTCTGGACCAAAAACCAACTTAACTAACGCGAGGGACTTGTTTACAAAAGCCACATGTGAAATATGAACAGAGCGCGTTTACACGCGGATATCTGCGTTTATTATCCTGCAGCAGGAAGCTGCGTCGCTCTGAGTGAACCGCAGACTTGTGTACTAAATCATGCAGCAAAATAGCACACCTCCAGAAGTGACACTATAGGTAGTGTGCTATTTTGACTTACAGTGTAACGCGGTTTGAGACGCAGCCCAAGTTCTGGTAACTGGGCACACAGACAGGagcacacactcagagagagagagagagagagagagagagagagagagagagagagagagagctgctgtGGACcaaatgatgaataaattaattccCTGTAGATTTCAAAGAACGCAAGAATGTGAAGTTCTCTTTCGTTTAGTTTCTCTGTAgtgttcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaacagagATGATGAGGTGATGTATTAAATGGAGCACTTTTCTGGCTCTGATCTGAAGCACTGAAAAACAGTCATGCCTTGGAGATTCTGCTCTGTTCTGTTAATACGGGCTTTTATTGGTTATGATTAATATTCAttagttttcttcattttcttctttctgattattttatcTTCATGGGGGCACGCTGCTAATTTATTTGATATTGTGCAAAGAGTTGCTAACATGCGAAGAGTTTATTGAGTTGAGATTGTGTGCATTAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09321 GBX; homeobox protein GBX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39710 lncRNA downstream 171283 26239467 ~ 26242883 (-) True G33697
TU39654 lncRNA downstream 186978 26222463 ~ 26227188 (-) True G33645
TU39619 lncRNA downstream 304506 26089378 ~ 26109660 (-) True G33617
TU39620 lncRNA downstream 307941 26089378 ~ 26106225 (-) False G33617
TU39625 lncRNA downstream 336265 26077375 ~ 26077901 (-) True G33621
TU39805 lncRNA upstream 114332 26532629 ~ 26532905 (-) True G33780
TU39807 lncRNA upstream 115366 26533663 ~ 26533925 (-) True G33782
TU39834 lncRNA upstream 192253 26610550 ~ 26610758 (-) True G33803
TU39856 lncRNA upstream 204702 26622999 ~ 26623218 (-) True G33821
TU39857 lncRNA upstream 205034 26623331 ~ 26623562 (-) True G33822
XM_026933069.2 mRNA downstream 161918 26243940 ~ 26252248 (-) True ccdc80l1
XM_026933519.2 mRNA downstream 195588 26212753 ~ 26218578 (-) True si:ch73-193c12.2
XM_034310195.1 mRNA downstream 308491 26090887 ~ 26105675 (-) False slc19a1
XM_026933605.2 mRNA downstream 308710 26086810 ~ 26105456 (-) False slc19a1
XM_026933141.2 mRNA upstream 11775 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA upstream 11775 26430072 ~ 26481633 (-) True iqca1
XM_034313781.1 mRNA upstream 214999 26633296 ~ 26635929 (-) False ecrg4b
XM_026933499.2 mRNA upstream 215171 26633468 ~ 26638538 (-) False ecrg4b
XM_034313783.1 mRNA upstream 222200 26640497 ~ 26646721 (-) False si:ch73-23l24.1
XR_003403851.2 other downstream 308710 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 506172 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2782153 23616157 ~ 23632013 (-) False uap1
XR_004580159.1 other downstream 4882738 21463861 ~ 21531428 (-) False raver2
TU39875 other upstream 212532 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 221536 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 221536 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 221536 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 221536 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile