RNA id: XM_026933069.2


Basic Information

Item Value
RNA id XM_026933069.2
length 3630
RNA type mRNA
GC content 0.47
exon number 8
gene id ccdc80l1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26243940 ~ 26252248 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTTGCTCCACTCTGCCCGTATGCGTGGACCCTGGAGGGCGATAAGAGCCGATGGAGGAGGTGGTCCCGCTCGCTGTGCTCGAATAGAGAGAGGAATGTGTTGTAAGAAAGAGATCGGGAAGCTCGTACACCGTTAGTTAAGGAAATGAAGGCGATCAGGACATCTCTGATGTGATTTCAGGGCCAAAATCTGCATGGATTTTTGTTCTCTGTGACTGGATTTTTACCTTAAAACGGACCATTTAAAGCACAGCGATGCTGTACTTGCTATTGGCCAATGGACTTTCCACCCTTGACTCCGCTGCAATGAGGCTCTTTCAAACacatgtggttttgtgtgttctgGTATGGACAGCACAAGCATCAGATTTCAAGTCTTCTGTAGGCACACATTTCACAAGAACACAGACTCATGCAGTGAAAAGACATATGGAATTGCAATCAAACACTTTTGCAGCCATCTCAGGGAACACGGCACTTCTTCAGGCAGATCAGGCTACAAATTCCTCAAGATCTTCAGCGAGGAGAGTTTTGAAAGGACGCAGACCTTCACCTCAAACAAGTTCAAACATGCAGCCAGTTGAGAAACCCAACGTGCTTCATGATCACACAGACACCATTGCGCCTCAACAGGGCTCTCCAAGCTCCCACTCCCGTACCTCCAATCGCACCAGCTCCATAAATATCCTTGCGAGGTTTGCAGGCAAGAACCGTGTGCTGGTCATTTCCGCACCACATGAGTCAGACGGATACTACAGGCTGATGATGAGTTTGCTCAAGCCAGATGTGTATTGCCAAATGGCAGACCGCCATATGCATCAGATCATCGTGTTCCATGGAAAGGAAGAAATGGGTGGCAAAGTGAGACGTGTGAGTAACGATGGCTCGATTGTTGAGGAACAGTTAGATCCAGCCTTAGTGCCTAGGCTGATGAGCTTTCTGAAACTGGAGGAGGGCAAGTTTGGCATGGTGCTGCTGAGGAAAACCTTGCAGGTGGAGGAGAGGTACCCATACCCAGTGCAGCTTGAGGCTGTGTATGAGATAATAGACCAGACGCCTAAGCGCAGACTTGAGAAAGTCAGACAGAAAGGGTTTGTGGAAAGGTGTAGGGCAACCGGAATGCAGGGAAAAGTAGTGCAGTCTATTGGGACAGTTTTGGCACATCCCAAATCCAATGTGCACAGAGGCTCTCAAGATATTGAGATGGTAGAAGGTGCAAGACCTCCTCCCAAGCCCTCTCAGAGTTCTACCACACAATCTACCACCATCCCTACCACCAAAATCACTAGAAGGAGAATAACTATACGAACATCTACTATTAAACCTGCAACTACAACAGTTGCAGTCACAACTCAGcttgctactactactactactactagtactactattagtactactactactgcatcCACTACACTACCCACAACTCTGCCTTCAACTACTGTCAATCCCACTACTTTATCGACTACAGTGGTGCAtagacacccacacacaccgtCATACAGACACAAAGCCCGACTAAGCGCCTTAGAACCCGTTACACACAACCATCAAAGGGAACACACTGCAACTAACCCATCCATTACCTCTGACTTAATGATCCaacacagagacaaacacaaaGACCGGACAGATAGGATTTCACCTGGAGCTCGCAGGCAAAAGCCCATCAAGGACAAACCGCCCAGGGGAAAATATGCAGGGAGGGAACAGATCAATGAACACGTAGAAGAGCAAGAAGCAGGAACGCCTACAGCGAGTGAACCAGTGGAGAGCCTTCTGACTACCAAAACAGGGAAGAGCCCCCGTGAGAAaactgagaagaagaaaaagacagagagaactGAGAAGCCTGTGAAAAAGaacaacacagagaaaaaagtgGCCAAACCCTCCAAGGATGCCAAGGTTAATCTTCACAACAGAAATGTGGTGCAAAAAGCGAGCAGCCTTGAGGATAAAGATGCTGTTGGCAAGCCTACAGAAAAGCCTGTTGATACTAAGAGGGCACTGGAGATATTTCTTAGTTATTTTGAGAAAAGAAGACGCCTGCTTGTAATTACTACTCCcaatgaaaataacaaaatgtacagTCAGCAGAAGGATGAGTATCTGGAACAAGTGTGTGACATGGCTCTGCGCAAAATCTCCATCATCACCATTTTTGGCCCTCTAGCCAACGGGACCATGAAAATAGACCATTACCAGATGGAGCAGGACAGGCCAGTGCGCAGCTTGCCAGTCAGTGAGCTCATCAACCAGGAACTCATCACAGCCTTCCGGAAGGAGCTTGGCATGGTTTACAATGACTTCTTCATGGTGCTCACCGACTTTGACATGAAAGTGAAGCAACAGTATGAAGTTCCTATTATCATGAAGGCAGTGTTTGATTACATCGACACATTCTCTTCACGCCTCAAAGAGATGGAGCTTCAGAGGAAGCTTGGAATTGCTTgcaaaaaagaagacaaatcCAGAACTCTTGAGAATTTCCTCTCTAGGTTTCGCTGGAGACGAAGACTGCTTGTCATCTCCACCCCTGATGATGAGGAATGGGCATATCAGCAGCAGCTCCATGCCCTGACCAGTCAGGCCTGCCACTTGGGGCTGCGTCACATGTCTGTTTTAAAGCTGACTGGGAGGGCCATGGAGGACATGGGTGGAGTCTTGGAGCTCTATCCAATCAATGGGAGTGCAACGGTGGAGCGTGAGGACCTTTCTGCCTCCCTAGTGCATGACATCAGGAACTACTTCCAGATCAGTGCAGATTACTTCTCCATGCTGCTGGTGGGCAAAGACGGCAATGTGAAGTCATGGTACCCTTCACCCATGTGGTCCATGTCCATCATCTATGAGCTGATCGACTCCATGCAGCTGCGCAGGCAGGAGATGGCCATCCAGCTGTCACTGGGCATGCGCTGCCCTGAAGAAGAATACGGTCACCATGAAGAATATCATGAAGGCTATCATCGTGGTTACGGTTACTAAACCAGTggtaaaagaagaaaagactTCCCTTTGACAGCCAGAGGTCCAAAAAGCAGCTAGACTTTGATAAATGTGATAAACTGAATAATCACTAACATGGTtttattctgtagcattactCTTATTTGTGAggcctttctctttttctgttttgttttgtttgggtaGTTGACTTGTTATCATCAGTGTTATAAGAACTACAATTTAGTGTAATTTAAAAGGTGGTGGTACGCtggcacctcacagctccagggtccccggtttgatcctgagcccAGGTGACTGAGTGGagtttgtgcatgtgcatgttctccccctgTCCGTGTGGATTTCCTTTGACTTTTCTGTATTGCCTATACTaatttgcccctaggtgtgaaggtgtgtgcatggtgccctgcaatggactgacaTCCaattcagggtgtgttcctgcctcacgGCCAATGGTATAGGCTCCGGACCCACCAcaacccagaccaggataaagcagatactgaagatgaatgaatgaatggtgtaCTTTGAATGTATTCTGTTTTATACGGGTTTTTTTTAgatcagtgttaaataattgtGTTACTCATATTCGTTAATTGTACTGTCTTTACCAGGACAATAAATTGAACAGACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39710 lncRNA downstream 1057 26239467 ~ 26242883 (-) True G33697
TU39654 lncRNA downstream 16752 26222463 ~ 26227188 (-) True G33645
TU39619 lncRNA downstream 134280 26089378 ~ 26109660 (-) True G33617
TU39620 lncRNA downstream 137715 26089378 ~ 26106225 (-) False G33617
TU39625 lncRNA downstream 166039 26077375 ~ 26077901 (-) True G33621
TU39805 lncRNA upstream 280381 26532629 ~ 26532905 (-) True G33780
TU39807 lncRNA upstream 281415 26533663 ~ 26533925 (-) True G33782
TU39834 lncRNA upstream 358302 26610550 ~ 26610758 (-) True G33803
TU39856 lncRNA upstream 370751 26622999 ~ 26623218 (-) True G33821
TU39857 lncRNA upstream 371083 26623331 ~ 26623562 (-) True G33822
XM_026933519.2 mRNA downstream 25362 26212753 ~ 26218578 (-) True si:ch73-193c12.2
XM_034310195.1 mRNA downstream 138265 26090887 ~ 26105675 (-) False slc19a1
XM_026933605.2 mRNA downstream 138484 26086810 ~ 26105456 (-) False slc19a1
XM_034310194.1 mRNA downstream 138485 26090887 ~ 26105455 (-) False slc19a1
XM_026933604.2 mRNA downstream 138485 26090887 ~ 26105455 (-) True slc19a1
XM_026933546.2 mRNA upstream 161918 26414166 ~ 26418297 (-) True gbx2
XM_026933141.2 mRNA upstream 177824 26430072 ~ 26481633 (-) False iqca1
XM_034310497.1 mRNA upstream 177824 26430072 ~ 26481633 (-) True iqca1
XM_034313781.1 mRNA upstream 381048 26633296 ~ 26635929 (-) False ecrg4b
XM_026933499.2 mRNA upstream 381220 26633468 ~ 26638538 (-) False ecrg4b
XR_003403851.2 other downstream 138484 26081149 ~ 26105456 (-) False slc19a1
XR_004577321.1 other downstream 335946 25900730 ~ 25907994 (-) False LOC113538393
XR_003403848.2 other downstream 2611927 23616157 ~ 23632013 (-) False uap1
XR_004580159.1 other downstream 4712512 21463861 ~ 21531428 (-) False raver2
TU39875 other upstream 378581 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 387585 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 387585 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 387585 26639833 ~ 26649379 (-) True si:ch73-23l24.1
TU39868 other upstream 387585 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile