G256772


Basic Information

Item Value
gene id G256772
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17944895 ~ 17945099 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303870
CCTTTGTATTTGCCTGTCTAATTTTCTGgcttcatcatgttttatatagTTGTTTACCTGTTTAATCATGCCGtgcctgtttgctgatcacctgacctatTGTCCGtctgtggtttttgtatctGATCCTGctggtttgtttgctttgacttatttaaataaaacccaCACCTGTACTTGCATCCTGCTCTCTGCATTTCATGAC

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption
ko04966 Collecting duct acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU303870 True 205 lncRNA 0.40 1 17944895 17945099

Neighbor

gene id symbol gene type direction distance location
si:ch211-66i15.4 NA coding upstream 198366 17739271 ~ 17746529 (+)
si:dkey-261h17.1 NA coding upstream 268591 17649314 ~ 17676304 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding upstream 317837 17427302 ~ 17627058 (+)
hrct1 LOC108276455 coding upstream 750649 17189879 ~ 17194246 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 769382 17172192 ~ 17175513 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 248098 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 401676 18346775 ~ 18351473 (+)
cd40 NA coding downstream 545382 18490481 ~ 18497402 (+)
casp9 casp9 coding downstream 666054 18611153 ~ 18620055 (+)
arhgap4a LOC108276165 coding downstream 678372 18623471 ~ 18644765 (+)
G256771 NA non-coding upstream 1540 17943151 ~ 17943355 (+)
G256726 NA non-coding upstream 66409 17877613 ~ 17878486 (+)
G256660 NA non-coding upstream 153989 17790511 ~ 17790906 (+)
G256627 NA non-coding upstream 197185 17747154 ~ 17747710 (+)
LOC117599208 NA non-coding upstream 215842 17703087 ~ 17729053 (+)
G256852 NA non-coding downstream 131849 18076948 ~ 18077812 (+)
G256851 zfp64 non-coding downstream 133068 18078167 ~ 18080332 (+)
G256899 bcas1 non-coding downstream 376970 18322069 ~ 18328256 (+)
G257068 NA non-coding downstream 675150 18620249 ~ 18621305 (+)
LOC113530356 NA non-coding downstream 896654 18841753 ~ 18846347 (+)
LOC113530386 slc26a9 other upstream 756518 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 819944 17071136 ~ 17124951 (+)
G256046 NA other upstream 1436515 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 1548650 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 1618281 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 934382 18879481 ~ 18934319 (+)
pkig NA other downstream 1253327 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 1533203 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 1680430 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 2445710 20390809 ~ 20398714 (+)

Expression


Co-expression Network