G257068


Basic Information

Item Value
gene id G257068
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18620249 ~ 18621305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304259
ACTTTTCAGTGTCAAAGAAACATGACAGACATGACAAAGAGACATTCAAAATTAGATTTTGAATACACTAGAATGGACATTTTTTGGGGGCTGGAAAATTTCACGCAGGATGTTTGAGACTGATGTCCTTTATCAACTTGGGAAGCAAagtgctctttttttaattatatcatTGTATCAGAAGCACTTTTCCTCCCCAGTTGATGACTGACTTTGGCAAATGTCGTTCCAAAATTGTTCAGCCCGTGTATTTTTGTACACCGGTAAATATTTAGAAAGGAAGAAGTACAAATATTTTAGACCCATGTAAGGGTCATGGCTTCAAATGCCCCTATCATCAAAAGGAGTACCATAATTTTTCACAATTTCCTCTTTCAATCCTTTCATACTTCCACATCTGCAAGGCACTGTTACGTTCTGCTCTGTATCCATCAATAATTCATTTTCCTGGTTGCTTATTTATATCTGTCCTTCTCATATAAGGCCTGCAGTTGTCCACTAAGGGTGAAACAATCCAGCCTCTAACTCGATTTTTAGCCTCCTCTGTTGTCTATGGAGAAGCTCATTCTGCCATGTTGAAGACAGTGTGCCATGGCATGAtcatttgctttctttttcaccTGACCACACTGAAGACAAACCAATCTGTCTTTTACTGCTTTTGACAACAAGCATAATCTTATGTTATTCTGCAGTTTAATTTTATGTCTGTGACATTTCAGTCATGTTTCCAAAGAACTGCCAATGACAGACTGCTAACTATTTTCTCACTTCGATTTCCTTTTTCTGCACCTCACCTACAGAAGAAATGGTGCAAC
>TU304260
ACTTTTCAGTGTCAAAGAAACATGACAGACATGACAAAGAGACATTCAAAATTAGATTTTGAATACACTAGAATGGACATTTTTTGGGGGCTGGAAAATTTCACGCAGGATGTTTGAGACTGATGTCCTTTATCAACTTGGGAAGCAAagtgctctttttttaattatatcatTGTATCAGAAGCACTTTTCCTCCCCAGTTGATGACTGACTTTGGCAAATGTCGTTCCAAAATTGTTCAGCCCGTGTATTTTTGTACACCGGTAAATATTTAGAAAGGAAGAAGTACAAATATTTTAGACCCATGTAAGGGTCATGGCTTCAAATGCCCCTATCATCAAAAGGAGTACCATAATTTTTCACAATTTCCTCTTTCAATCCTTTCATACTTCCACATCTGCAAGGCACTGTTACGTTCTGCTCTGTATCCATCAATAATTCATTTTCCTGGTTGCTTATTTATATCTGTCCTTCTCATATAAGGCCTGCAGTTGTCCACTAAGGGTGAAACAATCCAGCCTCTAACTCGATTTTTAGCCTCCTCTGTTGTCTATGGAGAAGCTCATTCTGCCATGTTGAAGACAGTGTGCCATGGCATGAtcatttgctttctttttcaccTGACCACACTGAAGACAAACCAATCTGTCTTTTACTGCTTTTGACAACAAGCATAATCTTATGTTATTCTGCAGTTTAATTTTATGTCTGTGACATTTCAGTCATGTTTCCAAAGAACTGCCAATGACAGACTGCTAACTATTTTCTCACTTCGATTTCCTTTTTCTGCACCTCACCTACAGAAGAAATGGTGCAACCTCTATGCTATTCATTGcatatgtttgtttatgtaCAATGAAAAATACATATGCCCATAACAAGACTCCATCAAATATTGAATTTCTAATGTAATCAAAGTGTAGAGGT
>TU304261
ACTTTTCAGTGTCAAAGAAACATGACAGACATGACAAAGAGACATTCAAAATTAGATTTTGAATACACTAGAATGGACATTTTTTGGGGGCTGGAAAATTTCACGCAGGATGTTTGAGACTGATGTCCTTTATCAACTTGGGAAGCAAagtgctctttttttaattatatcatTGTATCAGAAGCACTTTTCCTCCCCAGTTGATGACTGACTTTGGCAAATGTCGTTCCAAAATTGTTCAGCCCGTGTATTTTTGTACACCGGTAAATATTTAGAAAGGAAGAAGTACAAATATTTTAGACCCATGTAAGGGTCATGGCTTCAAATGCCCCTATCATCAAAAGGAGTACCATAATTTTTCACAATTTCCTCTTTCAATCCTTTCATACTTCCACATCTGCAAGGCACTGTTACGTTCTGCTCTGTATCCATCAATAATTCATTTTCCTGGTTGCTTATTTATATCTGTCCTTCTCATATAAGGCCTGCAGTTGTCCACTAAGGGTGAAACAATCCAGCCTCTAACTCGATTTTTAGCCTCCTCTGTTGTCTATGGAGAAGCTCATTCTGCCATGTTGAAGACAGTGTGCCATGGCATGAtcatttgctttctttttcaccTGACCACACTGAAGACAAACCAATCTGTCTTTTACTGCTTTTGACAACAAGCATAATCTTATGTTATTCTGCAGTTTAATTTTATGTCTGTGACATTTCAGTCATGTTTCCAAAGAACTGCCAATGACAGACTGCTAACTATTTTCTCACTTCGATTTCCTTTTTCTGCACCTCACCTACAGAAGAAATGGTGCAACCTCTATGCTATTCATTGcatatgtttgtttatgtaCAATGAAAAATACATATGCCCATAACAAGACTCCATCAAATATTGAATTTCTAATGTAATCAAAGTGTAGAGGTAGCGTAGTACATGTACTTGCATTGACTGTACCCCTGGTCATAGGCTACAGAATCTCAGATCATTAgcttaaaagttaaaaataccACAATGCTCAGCACCAGCAAGTAGAATTCTGGATAAGCCAATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304259 False 818 lncRNA 0.38 1 18620249 18621066
TU304260 False 927 lncRNA 0.37 1 18620249 18621175
TU304261 True 1057 lncRNA 0.37 1 18620249 18621305

Neighbor

gene id symbol gene type direction distance location
casp9 casp9 coding upstream 194 18611153 ~ 18620055 (+)
cd40 NA coding upstream 122847 18490481 ~ 18497402 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding upstream 268776 18346775 ~ 18351473 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding upstream 379337 18193197 ~ 18240912 (+)
si:ch211-66i15.4 NA coding upstream 873720 17739271 ~ 17746529 (+)
arhgap4a LOC108276165 coding downstream 2166 18623471 ~ 18644765 (+)
LOC113530736 ssr4,ssrd,LOC108275523,LOC108425558,LOC106567025 coding downstream 25403 18646708 ~ 18651829 (+)
fam3a fam3a,LOC102798212,LOC106567024 coding downstream 82147 18703452 ~ 18721160 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding downstream 103972 18725277 ~ 18779657 (+)
erbb3b erbb3 coding downstream 165461 18786766 ~ 18826105 (+)
G256899 bcas1 non-coding upstream 291993 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 539917 18078167 ~ 18080332 (+)
G256852 NA non-coding upstream 542437 18076948 ~ 18077812 (+)
G256772 NA non-coding upstream 675150 17944895 ~ 17945099 (+)
G256771 NA non-coding upstream 676894 17943151 ~ 17943355 (+)
LOC113530356 NA non-coding downstream 220448 18841753 ~ 18846347 (+)
G257127 NA non-coding downstream 270584 18891889 ~ 18936842 (+)
G257196 NA non-coding downstream 444549 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 496572 19117877 ~ 19118533 (+)
G257235 NA non-coding downstream 611698 19233003 ~ 19235261 (+)
LOC113530386 slc26a9 other upstream 1431872 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1495298 17071136 ~ 17124951 (+)
G256046 NA other upstream 2111869 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2224004 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 2293635 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 258176 18879481 ~ 18934319 (+)
pkig NA other downstream 577121 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 856997 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 1004224 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1769504 20390809 ~ 20398714 (+)

Expression


Co-expression Network