G256851 (zfp64)


Basic Information

Item Value
gene id G256851
gene name zfp64
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18078167 ~ 18080332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303952
cagaaaaacaacaaacatccAGTGAGGAGCaattctgcaggtggaaacaccCTACAGATGAGAGAGGATCACAGGAGAATGTCCAGAACGGTTTGAGCTGAGAGAAgcctacagtaactcatataaccactctttacaactgtggtgaacagaaaagcatctcagaatgcacaacacgtcaaacctcgaggtggactggctacaacagcaaaacaccatatcaggttccactcctgtcagccaagaacaagaatctgaggctatagtaGGTGCAGACTCAGGAAAACTGGTCAggtaaagattggaaaaagaccaggttaTCTTTAGCTGTTCAATTTTCcccaattctgatgtttcaATACTACCTatagcttttgacctgtatctgcatgactttatccATTATGCTgttgtcacatgattggctgattgaataattgcatgaatgagcaggtctACAGGTGtacctattaaagtgaccagtgagtatatatatagtatatggtCTGGCACCTGCCTGATGGTCAGGAATATCAGTTGGAGCCATTTTAGGCAGTTCAGATGAGTAAACTACAAAAATAAGGATTTTTActctttagaaataaaaatttccaaaatttCTACATTCCACAGTCTATCATTATATGTTACTTCCAAGAGCTCTAGATAAGCAGCATGCCATGAATGAGTATAAAAATATCTCtgttaaacataaacatatcaaACAAATCAAAGACTTTATGAAACAGAAATGTGCTTTCTCAGTCCTCAATCCTGTCAGGCGGATTAGAGTCGGAGAAGATCTGATGGGGTGAGAGCTGGTAGATGGGAGCCTGTTGATCCTGCTCTGAGATTGACAAGGTAACATTGTGTACAAGAAGGGAACTAGACGGCTCAATGTTTATATCAGGCACAACCAAACCATCGTCCAGAGCTGGATTCCCCTCCCCTGACTGCTTCAGGTCATCCTCAGATGGTGGCCTTTCGACGTCCAGTGGAGGTTCGAAGGTGGAgcttgctgttgctgctgtagtgatggaggcgtggccCTCGGTGACCACAGTGACCTCAGCGCCGCCCTGCTGGATGAGGGCGTGCAGGCTGTCAAGGTCCGAGCATGCCGTGATGAACGCGTGGCTGCTTTCTGAAGATGAAGTGGAACTGATGAAGGTCTGAGTCTCTACTGGGGCCTGAGAAGAAACATTTGTCTGCAGTAGAGGGTTTTCTTCACTGCCACTGATGTGAGTTAGTAAGACAGTCTGGTGCTCGAGGCTGCCCTCTGGTGGGGTCATGTGTTGCACTGGGGTTAACAGACTAACCTGCTGTATTATAGGGTTGAGAATTACATTCTGCCCTTTTGAACTAAGCAGAACTGTTCCAGGTTTAGAAGATGGGACGTCCACTGCTGCCTGGATGAACGTTCCCTCTTGACCTAGAGGAGGCGCTACAAAGATCTTGAGCTGTGTGTTTCCATAGGAAGGAACTGACCCATTTGTGAGCGTCATCGAAACCTGCTCGGGccctttatctgtttgttttgcagTACTATTTTGTGTCTGTGACTGTGCAAGTCTGAGCTGTTTTTCTGTATTGTTATGTTGCCTCTTATGACTCCGTAACGAATCTTCTCTAACAAATGATGCGTCGCACAGGTTGCAGCGGAACGCCCGGGCTGCTTCGAGCCTCATCCGGTACCGTGAACCTACAGGATTGGGTGACTCATCTCCTGTTTTTCGTCGTTTGGCACCTTTGCTGCGCCCCTCTACAACTTTCTCACCATGGCACTTCTTCATGTGGACGAGCAGGTTGGCACGCTGCTTGCTGGCGAAGGGGCAGCGGTGGCAGGTGAACGGGCGCTCATCCGAGTGCACGCGCTCATGTCTCTTGAGCGCCCCCTTGCTGGTGCAGGAGTACGGGCAGCAGGTGCAGCGTAGTGGGCGGGCGGGTGCGTGCTGGCGGGAGTGTGCACGCAGTGCCGCCTTGGCTGTACACCGGAAGTCACACTCTGTGCAGGCGTAGGCCCGTGGCGCAGCCGGGCATGCGACTTCAGGTTGGCCTTCATGGCACAGCGGTAATCGCACAGCTCGCACGCATATGGCTTCTCGCCCGAGTGCACACGTGTGTGACGCTTCAAGTCTGAGTTGATTTTGAATTTGGCGCCGCACT

Function

symbol description
zfp64 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZFP64 (ZFP64 zinc finger protein).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303952 True 2166 lncRNA 0.49 1 18078167 18080332

Neighbor

gene id symbol gene type direction distance location
si:ch211-66i15.4 NA coding upstream 331638 17739271 ~ 17746529 (+)
si:dkey-261h17.1 NA coding upstream 401863 17649314 ~ 17676304 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding upstream 451109 17427302 ~ 17627058 (+)
hrct1 LOC108276455 coding upstream 883921 17189879 ~ 17194246 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 902654 17172192 ~ 17175513 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 112865 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 266443 18346775 ~ 18351473 (+)
cd40 NA coding downstream 410149 18490481 ~ 18497402 (+)
casp9 casp9 coding downstream 530821 18611153 ~ 18620055 (+)
arhgap4a LOC108276165 coding downstream 543139 18623471 ~ 18644765 (+)
G256852 NA non-coding upstream 355 18076948 ~ 18077812 (+)
G256772 NA non-coding upstream 133068 17944895 ~ 17945099 (+)
G256771 NA non-coding upstream 134812 17943151 ~ 17943355 (+)
G256726 NA non-coding upstream 199681 17877613 ~ 17878486 (+)
G256660 NA non-coding upstream 287261 17790511 ~ 17790906 (+)
G256899 bcas1 non-coding downstream 241737 18322069 ~ 18328256 (+)
G257068 NA non-coding downstream 539917 18620249 ~ 18621305 (+)
LOC113530356 NA non-coding downstream 761421 18841753 ~ 18846347 (+)
G257127 NA non-coding downstream 811557 18891889 ~ 18936842 (+)
G257196 NA non-coding downstream 985522 19065854 ~ 19066133 (+)
LOC113530386 slc26a9 other upstream 889790 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 953216 17071136 ~ 17124951 (+)
G256046 NA other upstream 1569787 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 1681922 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 1751553 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 799149 18879481 ~ 18934319 (+)
pkig NA other downstream 1118094 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 1397970 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 1545197 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 2310477 20390809 ~ 20398714 (+)

Expression


Co-expression Network