G257235


Basic Information

Item Value
gene id G257235
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19233003 ~ 19235261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU304478
TAAAGCCCATGTACTGCTTCGCAGCCTGGTAGTCAGAGTCCAAGGTGGAGTTTAAAATCAGAGGGTCGTCCGTATTCAGAGAGTAGTTTGCTTTGTCTTCCTTGAACCTGCATACAAAAAGACAAACGTCCATCATGTGACGTAATGTGATTCGGTATTGGAAAAGGTGTTAGCTTTGGTGAGCAGGTAGGCCACGCCTCTCTCACTGGGACTCACAGGGACAGAGAAGCATGGAGAGAAATGCATAAACAATATCATAAAAGGAAAAAGGACATGTGGTGCCAGACTTCTCGGATACAGAGATGCTCATGTTGATACAGTCTTGAATTCATCCTGATTTTCAACCGTTACATGTCATGTTAAAACAACACAGCTGAATTAGAAATACTGAAACCCATCTGTGAATGAGTGAAAATTTAAACTGTTAGATTTAGCCAATAAAACCCCATTAAAATGGTTTCACAATTAAAAGTAATTCTTCAACACTTTTGGCCACAAAATCATTAGGAGATGAAAGAGAGACCATGGCaatttaggttaaaaaaaataaaaggtaatTAAATACTTAAACATGTTTGATTcaagacattttacatttaaaaacagttgATTCTCTAACtaagagtttttattttaaaagtggtGCTAAAGTGCCCTTCAGAATTCTTGGCACCCCTTATAAAATGAGCaaatctttttatataaaatacacaatttagtattataataatttataatttcacCCAAAACAATAAGGGAAACTTTGTTCATTCTAGATAATAGTCCAAAATAGTTTGGTAGTCATTCCCTTTGTTAGAATGCAGCGCATTTGAGTTCACGTGAGTCACCTGAGCCAGATTTACCTGATGAGTGGATGCTTAGTGAAGTCTGGATCACAAGCTCCTGTCATTATACTGGAGACTGGACATGTCTGAAACGGCACACGCAAATTAGCTGAGTCACACTACACCAGAAATGTTAGCACTCTATAGACTTGCTGCACTCATTGTGTCTTAGTGCAGTTTAAAAACtgagtgttttccctgctttaacacacctgaccCATTTAGAGCCATTCCTGAGTTCCTgagggtgtgttagagcatggAAGCTactgaaatgtgcaggacagggggtactccaTGCGCAGGATTTACAAGTGTAAATCCTCACACTTGTAACAGTTTGATAGTAAACTGATGTTTGCAGTTTCCACCAGGGGGAGATAAAACACCAgcttgcagttttttttctcttattttattAGTACTCCCCTCTCAACGCTCAATATCTTGTAATAATTCTTAACATTAGCTCCATATGTCTATAGAGTGAAAACAAGGTAACGTTCATTTGCTACTGCACCTTTGTAgccataaatatacagtaccaTTTCCTACTATACATACACAGTACCATTTTCTACATtctacaattttaaaataataataataatcataatgacattaacactataaaataacacactatGCAGTGAATTTTTGATGTGTAAgaagtgttaaacaaatcaaagcTTTTAAactcttatttttgttttcagtttcatgAGGGAACATCACCCACGAGGCTTATCAAAATTTTCTCAATTTCCAAGGCCAAGCACTTTGTCTGCTTCTTCTCCTAAGTTCTGAACGAAAACTAATTGTTTGGGGAAAGTCAAACCCATTTTGCAAATGCGTGCACTgatttcactatttacacatttcTACCATAATCctttattaaaatgtctttattaaaATGACCATGGAAAATATGTGCGGTTCATGTTTCTAAACATTTCACTTGTACTGTACACTATGTATAACACATTAtggactgaaataaaaaatatatcatttatagGCACTTCCTGTGCATAACCACGCTAACGTGTCCTTAATTACTGCTAAAGAACTATTATTTAATGTGTGACCAAGGAACACTGCAATAATCTCATCACTACACTGTTCTAGTGGATTACtgcagttttaatttaaatactttaagtttaaatagaaaaaacatttaaaaaaataaataaataacataaggCAACCTCATCAAAAGCTAAGGAAATTGCAtttggcgtttttttttttttttacctcgaAATGCATATTCTGTTCAAGCAGCTGTTTGTACAGAACTTCGTCTTCGATTGTGTGATAACCATGTCCAATACGCTCTGCTTTCAGCACTTCGACAGCCTGCAGAGGAAACACAAATGttaaggaaaaaaggaagaagctTAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304478 True 2259 lncRNA 0.36 1 19233003 19235261

Neighbor

gene id symbol gene type direction distance location
ttpal ttpal,LOC107716173,LOC107695756,LOC107673079,LOC107564663,LOC107568409 coding upstream 38145 19190772 ~ 19194858 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding upstream 45044 19167301 ~ 19187959 (+)
r3hdml r3hdml coding upstream 67742 19161213 ~ 19165261 (+)
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding upstream 115440 19091010 ~ 19117563 (+)
trnae-cuc_34 NA coding upstream 200015 19032917 ~ 19032988 (+)
ccn5 wisp2 coding downstream 28156 19263417 ~ 19271222 (+)
si:dkey-78k11.9 NA coding downstream 38026 19273287 ~ 19275753 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding downstream 48236 19283497 ~ 19294201 (+)
itih6 itih6 coding downstream 60258 19295519 ~ 19309834 (+)
atp6ap1b LOC108275744 coding downstream 87538 19322799 ~ 19331974 (+)
G257199 NA non-coding upstream 114470 19117877 ~ 19118533 (+)
G257196 NA non-coding upstream 166870 19065854 ~ 19066133 (+)
G257127 NA non-coding upstream 296161 18891889 ~ 18936842 (+)
LOC113530356 NA non-coding upstream 386656 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 611698 18620249 ~ 18621305 (+)
G257232 NA non-coding downstream 5851 19241112 ~ 19241568 (+)
G257234 NA non-coding downstream 7924 19243185 ~ 19245707 (+)
G257242 NA non-coding downstream 16184 19251445 ~ 19251797 (+)
G257231 NA non-coding downstream 24978 19260239 ~ 19311826 (+)
G257245 NA non-coding downstream 54659 19289920 ~ 19338836 (+)
pkig NA other upstream 10444 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 298684 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2044626 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2108052 17071136 ~ 17124951 (+)
G256046 NA other upstream 2724623 16508025 ~ 16508380 (+)
G257622 LOC108276210 other downstream 243041 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 390268 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1155548 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1274983 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1667844 20903105 ~ 20907459 (+)

Expression


Co-expression Network