r3hdml (r3hdml)


Basic Information

Item Value
gene id r3hdml
gene name r3hdml
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19161213 ~ 19165261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920224.2
AAGGAGCTCCTTCCACTGCAGCACCATGCGTGTGTGCTGCAGTCACCTGGTCTTGGCTGCCATCTTGTGGGCGATGCCGTGCACCAGAGCAGCTGTGGCTCTGACCAACACCACAGAGCTCTCTCCCCTCACTGTGGCTCATTTTGGGATTGAACTGAGCTGGAGGAACAGGAGCAGCAGCGATGTGCCTCACAGCCGGAGGAAGCGCTACATTTCCTCCAAGGATATGATGGCTTTGCTGGAATACCACAACCGTGTGCGATCTCAGGTCTTCCCACCTGCAGCAAACATGGAGTATATGGTGTGGGATGAGAGGCTTGCTAAATCAGCAGAGTCCTGGGCCTCACAGTGCATATGGGATCACGGGCCACCACATGTCATGAGGTACACAGGCCAGAACCTGTCCATCACCACTGGAAGGTATAGATCAGTCATTGAGCTGGTGAAATCATGGCATGATGAGAAGTATTCATTCTCCTACCCCAACAGATGCACTGGCTCTGTTTGCACCCACTACACACAGATGGTGTGGGCCAGCACCAGTAGGATTGGGTGTGCCATCAACAGGTGTTCAAATATGTATGTCTTTGGTGCTACATGGAAACAGGCCACCTTACTGGTCTGCAACTACTCCATCAAAGGTAACTGGGTGGGAGAAGCTCCATACAAGACAGGAAAGCCTTGTTCAGCTTGTCCTTCTATTTATCGTGGATCATGTAACAAGAATCAGTGCTCCACATCAAAACCCAGAAAAAAGCTCAAGAGGTTTTAGTCACACTGATTGAAGTGAATGATTTGTGACTGACAAAAGAACTTGGAAGCACATTTTTTGTGTCGCACCACTATTAAATCAGTTGAtttcttttgtaaaatattgcatttttacacGTTTTATACTGCAGTTGAACTAACAAATCGTCACACACAGACCCGCTGATTTAACTGTTGTAGTCATCCCAAGAGTCAGTCCTGTGACTCTGTTGTTGTCTCTTGTCCTGTCCCTGGACTGTTTGCACTGTTTTGTATGTTTGCATTACTGTAAGAGTGGCATTGCCGTTAGGTTCACGTTGAGAGTTAAGCACTTTTATGGTTTGTGTACACCCAATAAATTTTCTAACCTTA

Function

symbol description
r3hdml Predicted to be active in extracellular space. Orthologous to human R3HDML (R3H domain containing like).

NR:

description
peptidase inhibitor R3HDML

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920224.2 True 1122 mRNA 0.47 5 19161213 19165261

Neighbor

gene id symbol gene type direction distance location
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding upstream 43650 19091010 ~ 19117563 (+)
trnae-cuc_34 NA coding upstream 128225 19032917 ~ 19032988 (+)
LOC117599226 LOC108275925 coding upstream 189965 18969994 ~ 18971248 (+)
esyt1a LOC108276191 coding upstream 283867 18850483 ~ 18877346 (+)
pa2g4b pa2g4b,LOC108276026,LOC108425565,LOC107737517,LOC107593906,LOC107668344,LOC107591063,LOC107716155,LOC107673109 coding upstream 324273 18829063 ~ 18836940 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding downstream 2040 19167301 ~ 19187959 (+)
ttpal ttpal,LOC107716173,LOC107695756,LOC107673079,LOC107564663,LOC107568409 coding downstream 25511 19190772 ~ 19194858 (+)
ccn5 wisp2 coding downstream 98156 19263417 ~ 19271222 (+)
si:dkey-78k11.9 NA coding downstream 108026 19273287 ~ 19275753 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding downstream 118236 19283497 ~ 19294201 (+)
G257199 NA non-coding upstream 42680 19117877 ~ 19118533 (+)
G257196 NA non-coding upstream 95080 19065854 ~ 19066133 (+)
G257127 NA non-coding upstream 224371 18891889 ~ 18936842 (+)
LOC113530356 NA non-coding upstream 314866 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 539908 18620249 ~ 18621305 (+)
G257235 NA non-coding downstream 67742 19233003 ~ 19235261 (+)
G257232 NA non-coding downstream 75851 19241112 ~ 19241568 (+)
G257234 NA non-coding downstream 77924 19243185 ~ 19245707 (+)
G257242 NA non-coding downstream 86184 19251445 ~ 19251797 (+)
G257231 NA non-coding downstream 94978 19260239 ~ 19311826 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 226894 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 1972836 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2036262 17071136 ~ 17124951 (+)
G256046 NA other upstream 2652833 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2764968 16363546 ~ 16396245 (+)
pkig NA other downstream 33165 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 313041 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 460268 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1225548 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1344983 20510244 ~ 20514195 (+)

Expression


Co-expression Network