G260009


Basic Information

Item Value
gene id G260009
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23468826 ~ 23469057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307813
ggctctggtattggagcaggaagtacgtactctcctgaggaaggaggccatcgaggtggtccctcctcacgacagggagtcagggttctacagccggtacttcattgttcccaagaaggggggagggctgcgtcccattttggacttgcggcaattgaacctctcagtcgctcgactgaagttcaggatgcttacggtcactcaggtcatgtctcagatcaggtccgaggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307813 True 232 lncRNA 0.56 1 23468826 23469057

Neighbor

gene id symbol gene type direction distance location
LOC113530412 NA coding upstream 5220 23460595 ~ 23463606 (+)
LOC113530919 NA coding upstream 18114 23447629 ~ 23450712 (+)
LOC113530555 NA coding upstream 25201 23440496 ~ 23443625 (+)
LOC113530918 NA coding upstream 35170 23422194 ~ 23433656 (+)
LOC113530872 NA coding upstream 47598 23414817 ~ 23421228 (+)
LOC113530554 NA coding downstream 8137 23477194 ~ 23480770 (+)
LOC113530553 NA coding downstream 14668 23483725 ~ 23486524 (+)
LOC113530973 NA coding downstream 19453 23488510 ~ 23494390 (+)
LOC117599230 NA coding downstream 36134 23505191 ~ 23506978 (+)
LOC113530383 NA coding downstream 38482 23507539 ~ 23509653 (+)
G259978 NA non-coding upstream 106536 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 119889 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 160234 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 190917 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 404257 23026446 ~ 23064569 (+)
G260011 NA non-coding downstream 4856 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 58371 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 85539 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 357835 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 392585 23861642 ~ 23862570 (+)
G259993 NA other upstream 79512 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 85173 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 788284 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1926399 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2229827 21228320 ~ 21238999 (+)
G260415 NA other downstream 563170 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 799520 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 931527 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1155880 24624937 ~ 24636129 (+)

Expression


Co-expression Network