Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113530872 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 23414817 ~ 23421228 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026921236.2 | True | 1181 | mRNA | 0.42 | 5 | 23414817 | 23421228 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113530556 | NA | coding | upstream | 3418 | 23407809 ~ 23411399 (+) |
| znf341 | znf341 | coding | upstream | 83551 | 23319361 ~ 23331266 (+) |
| tti1 | tti1 | coding | upstream | 219562 | 23186491 ~ 23195255 (+) |
| tgm2a | tgm2 | coding | upstream | 235494 | 23172257 ~ 23179323 (+) |
| si:dkey-65j6.2 | kiaa1755 | coding | upstream | 243066 | 23152604 ~ 23171751 (+) |
| LOC113530918 | NA | coding | downstream | 966 | 23422194 ~ 23433656 (+) |
| LOC113530555 | NA | coding | downstream | 19268 | 23440496 ~ 23443625 (+) |
| LOC113530919 | NA | coding | downstream | 26401 | 23447629 ~ 23450712 (+) |
| LOC113530412 | NA | coding | downstream | 39367 | 23460595 ~ 23463606 (+) |
| LOC113530554 | NA | coding | downstream | 55966 | 23477194 ~ 23480770 (+) |
| G259978 | NA | non-coding | upstream | 52527 | 23344862 ~ 23362290 (+) |
| G259968 | NA | non-coding | upstream | 65880 | 23332680 ~ 23348937 (+) |
| G259962 | NA | non-coding | upstream | 106225 | 23307755 ~ 23308592 (+) |
| G259690 | ctnnbl1,LOC106942865 | non-coding | upstream | 136908 | 23277434 ~ 23277909 (+) |
| G259540 | LOC108276061 | non-coding | upstream | 350248 | 23026446 ~ 23064569 (+) |
| G260009 | NA | non-coding | downstream | 47598 | 23468826 ~ 23469057 (+) |
| G260011 | NA | non-coding | downstream | 52685 | 23473913 ~ 23474444 (+) |
| G260074 | NA | non-coding | downstream | 106200 | 23527428 ~ 23562384 (+) |
| G260083 | NA | non-coding | downstream | 133368 | 23554596 ~ 23555077 (+) |
| G260222 | NA | non-coding | downstream | 405664 | 23826892 ~ 23827631 (+) |
| G259993 | NA | other | upstream | 25503 | 23387538 ~ 23389314 (+) |
| LOC117599309 | NA | other | upstream | 31164 | 23371744 ~ 23383653 (+) |
| LOC113530514 | LOC108275916 | other | upstream | 734275 | 22671398 ~ 22680542 (+) |
| LOC117599233 | NA | other | upstream | 1872390 | 21538045 ~ 21542427 (+) |
| si:ch73-290k24.5 | LOC108275473 | other | upstream | 2175818 | 21228320 ~ 21238999 (+) |
| G260415 | NA | other | downstream | 610999 | 24032227 ~ 24032724 (+) |
| G260483 | LOC108275756 | other | downstream | 847349 | 24268577 ~ 24269267 (+) |
| rnf146 | rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 | other | downstream | 979356 | 24400584 ~ 24453538 (+) |
| ddx58 | ddx58 | other | downstream | 1203709 | 24624937 ~ 24636129 (+) |
