LOC113530927 (tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211)


Basic Information

Item Value
gene id LOC113530927
gene name tuba1a,Tuba1a,tuba1c,LOC108255233,LOC108275946,LOC107664173,LOC108431527,LOC102311436,LOC105935211
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20147178 ~ 20155096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921333.2
GCTCCTTTTTCCTAAATGTGTTCTGTCCTCCCACAGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAACTCTACTGTCTTGAACACGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAGACCATCGGAGGTGGAGATGATTCCTTCAACACCTTCTTCAGCGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGCGGTCACTACACCATTGGCAAGGAAATTATTGATCTGGTGTTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACATACACTAACCTGAATaggctgattggtcagattgtgTCCTCCATCACAGCCTCTCTCCGTTTTGACGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTGCATGCCTGCCGCCGCCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCTTGGAGAAGGATTATGAGGAGGTTGGTGTTGACTCCATTGAAggtgagggagaggaagagggagaggagTATTAAAATGCTGAAGGAAGTCATTCTCTGCTGCAGGATGAAATGAATCTTttacaacaaacaaaataacactgtatgcaaaaacaaaaaataaagctCCTTTCAAGTTCA
>XM_026921335.2
GTATAAATAACTCCACCCCCAAGCTCTTGACCATTTCGTGTTCTCACTACAGACTCATTACAGTCAAGCTGTGAGAAGTCCAGTTCaacctttattttttgtaaGCTTTCACTTAGATCCACATTAAAATGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGTCTTGAACATGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAAACCATCGGCGGTGGCGATGATTCCTTCAACACCTTCTTCAGTGAGACTGGAGCCGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGTGGTCACTACACCATTGGCAAGGAGCTGATTGACCTGGTTCTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACTTACACCAACCTCAACAGGCTTATTAGTCAGATTGTGTCCTCCATCACAGCCTCTCTCCGTTTCGATGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTACGCCAAGCGCGCCTTCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAGGATTATGAAGAAGTGGGTGCTGACAGTATGGAGGgagaagaggaaggagaggagtATTAAGTTgaccttctttccttcctttttcttttccttggcAGACCTGTCATGTCTTTTTATGTGTGTTCTTGTACTTTATTTCATCAGTAGCAAGAGCTAAACAATAAAGGTGGAAAAAGCTTCCTCTGCA
>XM_034311545.1
TCTATAAATTGGGAGGCTCGCGCAATGAAAAGCCCATTCTTCTTACATCGACCCGTTAGTTGTCGAGCTGTAAGATTTCTCCACGGAGACACACTTTCTTATTATCCTCACTATCAAGACCGTACGGAACAATGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAACTCTACTGTCTTGAACACGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAGACCATCGGAGGTGGAGATGATTCCTTCAACACCTTCTTCAGCGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGCGGTCACTACACCATTGGCAAGGAAATTATTGATCTGGTGTTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACATACACTAACCTGAATaggctgattggtcagattgtgTCCTCCATCACAGCCTCTCTCCGTTTTGACGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTGCATGCCTGCCGCCGCCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCTTGGAGAAGGATTATGAGGAGGTTGGTGTTGACTCCATTGAAggtgagggagaggaagagggagaggagTATTAAAATGCTGAAGGAAGTCATTCTCTGCTGCAGGATGAAATGAATCTTttacaacaaacaaaataacactgtatgcaaaaacaaaaaataaagctCCTTTCAAGTTCA
>XM_034311546.1
GCTCCTTTTTCCTAAATGTGTTCTGTCCTCCCACAGCGTGAGTGCATCTCCATCCACGTAGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAACTCTACTGTCTTGAACACGGCATTCAGCCGGACGGACAGATGCCCAGCGACAAGACCATCGGAGGTGGAGATGATTCCTTCAACACCTTCTTCAGCGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTttgtggatctggagcccaCTGTCATAGATGAGGTCCGCACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGACGCCGCCAACAATTACGCTCGCGGTCACTACACCATTGGCAAGGAAATTATTGATCTGGTGTTGGACAGGATCCGCAAACTGGCTGACCAGTGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTCGGTGGTGGAACCGGTTCTGGTTTCACCTCCCTGCTGATGGAACGCCTGTCTGTTGACTACGGTAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCTACTGCTGTGGTGGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTAGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAAGCCATCTATGACATTTGCCGTAGGAACCTCGATATCGAGCGTCCTACTTACACCAACCTCAACAGGCTTATTAGTCAGATTGTGTCCTCCATCACAGCCTCTCTCCGTTTCGATGGTGCCCTCAATGTCGATCTTACTGAATTCCAGACCAACTTGGTGCCCTACCCCCGTATTCATTTCCCACTGGCCACCTATGCTCCAGTGATCTCTGCAGAGAAGGCTTACCACGAGCAGCTCTCTGTGGCTGAAATCACAAACGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCTAAAGATGTGAACGCTGCTATCGCCACCATCAAGACCAAACGCACCATCCAGTTtgtggactggtgtcccacTGGGTTCAAGGTAGGCATCAACTACCAGCCCCCCACTGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCCGAGGCCTGGGCTCGTCTCGATCACAAGTTTGATCTGATGTACGCCAAGCGCGCCTTCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAGGATTATGAAGAAGTGGGTGCTGACAGTATGGAGGgagaagaggaaggagaggagtATTAAGTTgaccttctttccttcctttttcttttccttggcAGACCTGTCATGTCTTTTTATGTGTGTTCTTGTACTTTATTTCATCAGTAGCAAGAGCTAAACAATAAAGGTGGAAAAAGCTTCCTCTGCA

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).
tuba1a Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921333.2 False 1494 mRNA 0.53 3 20148652 20150405
XM_026921335.2 True 1605 mRNA 0.52 4 20152246 20155096
XM_034311545.1 False 1592 mRNA 0.53 4 20147178 20150405
XM_034311546.1 False 1510 mRNA 0.53 3 20148652 20155096

Neighbor

gene id symbol gene type direction distance location
pmelb LOC108275940 coding upstream 8880 20129706 ~ 20138298 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding upstream 19520 20119950 ~ 20127658 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding upstream 103511 20037421 ~ 20043667 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding upstream 181765 19900014 ~ 19965413 (+)
zbtb48 zbtb48,LOC102780700 coding upstream 298516 19839711 ~ 19848662 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding downstream 28141 20183237 ~ 20198652 (+)
rarga rarg,rarga,LOC107715005,LOC107593976,LOC107697942,LOC107664174,LOC107707012 coding downstream 76992 20232088 ~ 20268787 (+)
hoxc13a hoxc13,hoxc13a,LOC108275585,LOC103031462,LOC107715003 coding downstream 181875 20336971 ~ 20340547 (+)
hoxc12a hoxc12a,LOC108275575,LOC108433365,LOC103031159,LOC107664239,LOC107593973,LOC107697936,LOC107715004 coding downstream 192063 20347159 ~ 20350929 (+)
hoxc11a hoxc11,LOC108276183,LOC107715002,LOC108433364,LOC107593971,LOC107706974,LOC107664237 coding downstream 203076 20358172 ~ 20361279 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 37952 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 43138 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 47680 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 76930 20058251 ~ 20070248 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding downstream 214899 20369995 ~ 20386813 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 412694 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 456445 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 508586 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 527274 20682370 ~ 20756538 (+)
si:ch73-206d17.1 LOC108275771 other upstream 442115 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 668283 19478302 ~ 19478895 (+)
pkig NA other upstream 924619 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1212859 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2958801 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 235713 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 355148 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 748009 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 1073224 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1382949 21538045 ~ 21542427 (+)

Expression


Co-expression Network