LOC113530555


Basic Information

Item Value
gene id LOC113530555
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23440496 ~ 23443625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311581.1
AAACCCGGCTTCCTCTCAGAGCTTACCTACATCTGCTTCATCTCCACACCTCAACTTCTACAAAAACACCAACAATGACGTCTCAAGTCACACTGCTGCTCATCTGCATGCTTTTCTCCAGAGcactGTCACTGACTTGTCTCCAGTGTCTGCCATCAGTGTCTGGAACATGTAACAACATACAGACAACCTGTCCAGATCAGTGTCTCACTCTGACCACTTCTGTGTACtcgaGTGGTACAAATTTGTCATATGGTAAAATGAAGACTTGCGGCATGACAGAGATGTGTGTTAGCATGAGCATGAACCTGGGAATGATGAAAATGACCTACAATGCCAAATGCTGCAGCACTGATCTCTGCAACTCTGAAACTCTGCCAGCTCTTCCACAGCAGGCTCCCAATGGGAGAATGTGTTACACCTATGCTGCTAACGGCTACTCAGGCAAAATGAGCTGTGAAGGAAATGAAGATCGCTGCATGACTGCATCAGttcgcCTAGGAAGTAATACCCTGtctgtgttgaaaggatgtgtGTCCAAGAACTTCTGCGTTGCATCTGGATCATCAGGCATGCCAGAAATCGGTCTATCAAATGTGGAGTGTTGTGAGGGGAACCTGTGTAACACAGGGAATTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAGTTCTGCGAGTAACACAGGGAGTTCCTCAGGTGACAATTCTGCGAGTAAAacactgagtttcctcctcATGATCGTCCCTCTGCTCTCTTCCATCCTCTTCTACTGAGCTCTCGGCTTATGAAGTAGCTCACTTTAAGCTTTATCTGGTACAGTATGAAAAAGGGAAATAGAAAGGTAATAGAAATATAAGTTTATTTTTGGTTGTTAAGGGTTTTTTAGATTGTCTTAGTTCTAACTGATTTATAGATAATAATTTTGTTTGCAAATcaattatgataaaaaaaagactttaatcTTTGACTAGACTAACAAGTCTAGACTAGACTAACAAGTAAGAAATTGAATATTAAGTCTAAGTTAGGTCTATGgatgttattcatttttattaattttttcatattataatattaactaatattcagattattattattattattattattattattattattattattattaccaaaaGCTTTATTGTGAGGTAACCAAACTGCTTTGTGCTGtgcatgtttattaaatatatgtaataaatgaatatatgtcTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311581.1 True 1273 mRNA 0.39 6 23440496 23443625

Neighbor

gene id symbol gene type direction distance location
LOC113530918 NA coding upstream 6840 23422194 ~ 23433656 (+)
LOC113530872 NA coding upstream 19268 23414817 ~ 23421228 (+)
LOC113530556 NA coding upstream 29097 23407809 ~ 23411399 (+)
znf341 znf341 coding upstream 109230 23319361 ~ 23331266 (+)
tti1 tti1 coding upstream 245241 23186491 ~ 23195255 (+)
LOC113530919 NA coding downstream 4004 23447629 ~ 23450712 (+)
LOC113530412 NA coding downstream 16970 23460595 ~ 23463606 (+)
LOC113530554 NA coding downstream 33569 23477194 ~ 23480770 (+)
LOC113530553 NA coding downstream 40100 23483725 ~ 23486524 (+)
LOC113530973 NA coding downstream 44885 23488510 ~ 23494390 (+)
G259978 NA non-coding upstream 78206 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 91559 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 131904 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 162587 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 375927 23026446 ~ 23064569 (+)
G260009 NA non-coding downstream 25201 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 30288 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 83803 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 110971 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 383267 23826892 ~ 23827631 (+)
G259993 NA other upstream 51182 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 56843 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 759954 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1898069 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2201497 21228320 ~ 21238999 (+)
G260415 NA other downstream 588602 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 824952 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 956959 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1181312 24624937 ~ 24636129 (+)

Expression


Co-expression Network