Gene
RNA
| Item | Value |
|---|---|
| gene id | gdnfa |
| gene name | gdnf |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 4362933 ~ 4368075 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| gdnf | Enables protein homodimerization activity. Involved in several processes, including negative regulation of apoptotic process; positive regulation of morphogenesis of an epithelium; and regulation of RNA metabolic process. Acts upstream of or within several processes, including neural crest cell migration; neuron projection development; and positive regulation of cell population proliferation. Located in Golgi apparatus and extracellular region. Implicated in Hirschsprung's disease; Parkinsonism; congenital central hypoventilation syndrome; epilepsy; and pheochromocytoma. Biomarker of acoustic neuroma; autoimmune disease (multiple); neurodegenerative disease (multiple); pancreatic cancer; and vasculitis (multiple). |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0021784 | postganglionic parasympathetic fiber development | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0048485 | sympathetic nervous system development | biological_process |
| GO:0072107 | positive regulation of ureteric bud formation | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0030432 | peristalsis | biological_process |
| GO:0048255 | mRNA stabilization | biological_process |
| GO:0051584 | regulation of dopamine uptake involved in synaptic transmission | biological_process |
| GO:0032770 | positive regulation of monooxygenase activity | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0090190 | positive regulation of branching involved in ureteric bud morphogenesis | biological_process |
| GO:0001656 | metanephros development | biological_process |
| GO:0031175 | neuron projection development | biological_process |
| GO:0043524 | negative regulation of neuron apoptotic process | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| K05452 | GDNF; glial cell derived neurotrophic factor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026943685.2 | True | 1538 | mRNA | 0.49 | 3 | 4362933 | 4368075 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113544760 | NA | coding | downstream | 70148 | 4291752 ~ 4292785 (-) |
| LOC113544759 | NA | coding | downstream | 75383 | 4286606 ~ 4287550 (-) |
| LOC113544758 | NA | coding | downstream | 78259 | 4283685 ~ 4284674 (-) |
| LOC113544879 | ranbp3l | coding | downstream | 161061 | 4186997 ~ 4201872 (-) |
| ucp3 | ucp3,LOC108277383,LOC103026990,LOC108433282,LOC107743402,LOC107578242,LOC107697442 | coding | downstream | 208276 | 4150623 ~ 4154657 (-) |
| unc5c | unc5c,LOC108277026,LOC108435138,LOC105911728,LOC106564027,LOC105025160,LOC106568183 | coding | upstream | 203303 | 4571378 ~ 4722574 (-) |
| smad4a | smad4,smad4a,LOC107668639,LOC107559658,LOC107741365,LOC108435141 | coding | upstream | 519780 | 4887855 ~ 4898884 (-) |
| LOC113544870 | LOC108276621 | coding | upstream | 536135 | 4904210 ~ 4906752 (-) |
| arvcfa | LOC108276558,LOC108435143 | coding | upstream | 564086 | 4932161 ~ 4947814 (-) |
| zdhhc8a | LOC108277273 | coding | upstream | 591249 | 4959324 ~ 4975141 (-) |
| G263539 | NA | non-coding | downstream | 738 | 4361441 ~ 4362195 (-) |
| G263472 | nup155 | non-coding | downstream | 79742 | 4281500 ~ 4283191 (-) |
| G263405 | NA | non-coding | downstream | 181576 | 4167609 ~ 4181357 (-) |
| G263404 | NA | non-coding | downstream | 197779 | 4162692 ~ 4165154 (-) |
| G263397 | NA | non-coding | downstream | 250849 | 4111869 ~ 4112084 (-) |
| G263652 | NA | non-coding | upstream | 108990 | 4477065 ~ 4478782 (-) |
| G263659 | NA | non-coding | upstream | 123579 | 4491654 ~ 4494196 (-) |
| G263705 | NA | non-coding | upstream | 342674 | 4710749 ~ 4719085 (-) |
| G263712 | NA | non-coding | upstream | 408219 | 4776294 ~ 4776508 (-) |
| LOC117599362 | NA | non-coding | upstream | 439127 | 4807202 ~ 4866985 (-) |
| G263262 | phf12 | other | downstream | 296550 | 4052989 ~ 4066383 (-) |
| akap1a | NA | other | downstream | 735633 | 3567419 ~ 3627300 (-) |
| LOC113544717 | LOC108276916,LOC108276915 | other | downstream | 1394751 | 2965655 ~ 2968182 (-) |
| si:ch73-1a9.3 | NA | other | downstream | 1602748 | 2679675 ~ 2760185 (-) |
| npffr1l3 | LOC108276623 | other | upstream | 548415 | 4916490 ~ 4926650 (-) |
| git2b | git2,LOC108277167,LOC108435150 | other | upstream | 665793 | 5033868 ~ 5157309 (-) |
| tdgf1 | LOC108276616,LOC108435131,LOC104953549 | other | upstream | 878859 | 5246934 ~ 5251500 (-) |
| LOC113544902 | LOC108276927,LOC108425189,LOC107706776,LOC107554527 | other | upstream | 1885864 | 6253939 ~ 6275764 (-) |
| ttc28 | ttc28,LOC107705044,LOC107602249,LOC107588927 | other | upstream | 2467672 | 6835747 ~ 7044112 (-) |
