zdhhc8a (LOC108277273)


Basic Information

Item Value
gene id zdhhc8a
gene name LOC108277273
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4959324 ~ 4975141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943922.2
GACTAATGATTCTATTTTATAAACGATTCACATTGCGTggattttgattcatttgattcattgaGAAGCGGTTTCTTTATGGCGCGAGTGTTCATTGtgttatattttctaaaaagaagTTATTCATATGTTGAGATGCGAACAACGTAAACATCAAGTCTTCTTTTTTTAGTCTCAGTTCGTTCGAGCCCGTGAATCGCTTCACTCGACCAATTTAAAAGAGTCGTTCATAAAGAACCGATTCGTTTGTGAATCGTTCGTACTTAGCAGTAGCGCCAAATTAAATTTAGTTCGAGAGACGAAGAGAAGCAATGAGCAATTTCTTTACCTTCCCTCACTGGTTTTACAgggtttaaaatgtaaaaaagaaagaaagaaagaaagaaagaaggaaagtaagaaagaaagaaagaaagaaagaaagaaagagaaagcgtttgttttgtttggtggAAGTATGCTACGTGTTTGGGATTGAAGTGTGTGGAAAGAGCGGAAATGGCAACCGGGAGCGGAGAGCGCGTGAAAGCGAGCGCCTACATCCCCGTGTCCATCACCGCCAGTCTGCTGCTGGTGACCTCCACCTTCTTCTTCACCTTCACGTGTCCTTGGCTCGCTGAGAATGTGTCTCTTGCTTTCCCTCCATGCGTCGGCATCACATTCCTTTTTGTCCTGGCAAACTTCACCATGGCAACGTTCACAGATGCCGGCGTGCTGCCAAGGGCTAACGAGGATGAAGATAAGGATGAAGACTCGCGTGCACCCCTCTATAAGGACGTGGAGGTCCGGGGAATCCAATTTCGGATGAAGTGGTGTGCCTCCTGCAACTTCTACAGACCCCCTCGCTGCTcccactgtagtgtgtgtgaccACTGTGTGGAGGACTTTGACCATCATTGCCCCTGGGTGAACAACTGCATCGGGAGACGAAACTACcgtttcttcttcctcttcctgctgTCTCTCAGTGTGCACATGGTGGCCATTTTCTCTGGGGGTCTCCTGTTTGTACTGGACCACCTGGAAGCCCTGTGGGACCTACGGGCAACCATCACTCTGTCCATCATGAGTATGTCAGGCCTTTTTTTCATCCCTGTTATGGGATTCGCATGCTTCCATATGGTCCTGGTAGCAACAGGACGAACCACAAATGAACAGGTGACTAGAAAGTTCCAAGGAGGAGCAAATCCCTTTACACGTGGCTGCTGTGGCAATGTGGAGTTTGTTCTGTGTAGTCCAATTACTCCAAGATACACCAGGAAGTTGGGAAACAAGCAGATTGTCCATATACAACCACCATTCCAAACACCAGAGTCCCTCAAAATGTCACCCATGAAAGTTGAAGACAATGGGATGCAAACTGAAATGCTTTCCGTCAAAAGACAGTCTGCAGGAGAACGGGATGAGTGTAAACAGCTGAACACACCGCCCCCTATGCCACCCAAACCCAACCCGGTTCTGCTCAAGAGCCACGTTGCTACGGTGCAAGAGAGCTTACTGCAATCCAAAACTGCAGTGCCGTCTGCCCAGAGCACCATCGGTCAGATCGTAGAGTCGCCTTCCAGGCTGCATTATCAAGTTCCTAGGGAGCAGatGGACTGTACGAAGAACCCCCAGCTCCACATGAGTGGTTTTGCCAAGGATCCATTTTTTGAATCTGGAATGGGGCAGACTCCTATCTCTACCCACCTGGCCCTGCAGTCCAGCACACTTCCCGTGAACAAATTCATGCTGAACTCCCACTCCCTCACTTTGAAACACACTCGCTGCAGAGGAGACCGAGCCCATCAGTGTCCCGATTCTGTGGCATCTTCCTCCAACCAGGGCATCCTCAGCCTCTCCTATGACAGCCTCCTCAGCCCAGCACAACGCGGGCCCCTCAGAGTGAACTACCTGCCTCCTTTCCTTCCCTTAGATCTGGGTCTGGCTATCAGGTGCCCAGCAGATGCCCAGCATGCACCCTCCCGTACCTGCAGCCCGGGTTTCACTGGCATGAGCAGGCAGTCTCCCGTGCACTATGACAGCCTTTCCAAACCTACCATGAGCTCTATCCCGGAACGCCACGAACTGGAGGAGCGAGAAAAGCAGCCGTCTTTGTTTCCCTTTCAGGATATGTCTGTTTACGACATGCCAAGTGGGCGCCTATCCCGGAGGCCCACTCCCCCCGCCTATGGCTCTCGAGAGTTCCTCATGAGCAGTGCAGCTTACGGCTACGCCTCCTCGCTCCAGCGGGCATCTAGAACTTCCAGCTCGTCCATGCATGCCAATATGGCCCACCAGAGTCGCTCACTCTCGCCCTCAGCCTGTAGTACTCTGGAGCCCTGTGCTCAGCACTCAACCTCATCTATTCCCTGCCCGATGCCCAGCTCCTCCTACACAGCGCAGAAAGCTCTGGCTTTAATCATTACCTCAGAGAGAAAAGACACAGGTCTGTAGTATGAGTTGCTGATTCTCCCAGTCTGTGTAAAGATCATATTTATGATGAAGAAAGTCCCATTTATCATTGTTTAATTTCACATGCTCCTATTGATCCATAAATTCAActtttttacagatttattatataaagCAATTCAACTTTTTCATATTGGTTACCAATGCTTCCCATTAGCAGAAAAACATATAAGCTTCATTGATAGACATGTAACAGTTGCTGTTTGTTCTTCtctgacaggaagtgaagaaCAGTTTCATGCTATATGATGAATACATTTTAGTAGTTAAACGTGCTCAGtgtaatttgttgttttttgcttcttttatgttttaaagCTACTCTCCATGAATGTTAAGTTAGAACACGTTCTGTAAATTTTGCCAAAATTCTTATGACATTTTTGtagctgtcaataaaatatgTACTCAGAGA

Function

NR:

description
probable palmitoyltransferase ZDHHC8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943922.2 True 2869 mRNA 0.47 10 4959324 4975141

Neighbor

gene id symbol gene type direction distance location
arvcfa LOC108276558,LOC108435143 coding downstream 11510 4932161 ~ 4947814 (-)
LOC113544870 LOC108276621 coding downstream 52572 4904210 ~ 4906752 (-)
smad4a smad4,smad4a,LOC107668639,LOC107559658,LOC107741365,LOC108435141 coding downstream 60440 4887855 ~ 4898884 (-)
unc5c unc5c,LOC108277026,LOC108435138,LOC105911728,LOC106564027,LOC105025160,LOC106568183 coding downstream 236750 4571378 ~ 4722574 (-)
gdnfa gdnf coding downstream 591249 4362933 ~ 4368075 (-)
LOC113544909 NA coding upstream 1296 4976437 ~ 4985219 (-)
gltpb LOC108277169,LOC108435149,LOC107679516,LOC107565272,LOC107730971 coding upstream 50014 5025155 ~ 5032642 (-)
srsf9 srsf9,LOC107560829,LOC100707309 coding upstream 105613 5080754 ~ 5085163 (-)
epb41l4a epb41l4a,LOC107653778,LOC107692020,LOC107709672 coding upstream 140847 5115988 ~ 5168295 (-)
LOC113544764 NA coding upstream 242522 5217663 ~ 5221213 (-)
LOC117599392 NA non-coding downstream 56367 4901344 ~ 4902957 (-)
G263736 rfx3 non-coding downstream 72753 4882413 ~ 4886571 (-)
LOC117599362 NA non-coding downstream 92339 4807202 ~ 4866985 (-)
G263712 NA non-coding downstream 182816 4776294 ~ 4776508 (-)
G263705 NA non-coding downstream 240239 4710749 ~ 4719085 (-)
G263918 NA non-coding upstream 102708 5077849 ~ 5080642 (-)
G264183 NA non-coding upstream 547249 5522390 ~ 5522699 (-)
G264188 NA non-coding upstream 597861 5573002 ~ 5573292 (-)
G264201 NA non-coding upstream 652336 5627477 ~ 5667868 (-)
G264245 NA non-coding upstream 740141 5715282 ~ 5756562 (-)
npffr1l3 LOC108276623 other downstream 32674 4916490 ~ 4926650 (-)
G263262 phf12 other downstream 892941 4052989 ~ 4066383 (-)
akap1a NA other downstream 1332024 3567419 ~ 3627300 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 1991142 2965655 ~ 2968182 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 2234851 2712442 ~ 2724473 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 58727 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 271793 5246934 ~ 5251500 (-)
LOC113544902 LOC108276927,LOC108425189,LOC107706776,LOC107554527 other upstream 1278798 6253939 ~ 6275764 (-)
ttc28 ttc28,LOC107705044,LOC107602249,LOC107588927 other upstream 1860606 6835747 ~ 7044112 (-)
G265153 NA other upstream 2273012 7248153 ~ 7249074 (-)

Expression


Co-expression Network