LOC113544870 (LOC108276621)


Basic Information

Item Value
gene id LOC113544870
gene name LOC108276621
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4904210 ~ 4906752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943914.2
CCAAACTTGTCAGCACGATGAGGCTGACAGCAACGACCTGCCCTTTATGGTAGATCACAAGATCAACAAGGACAAGGCTGTTTGTTCACCCCTTTCTCTCCCACGCGCACACCCCCCATATCAGCTTGGACAGAAAACGTGGGACGAGTTCACAAGTCTACCCAGGAGCCCAGGATTATTCGCCTTATCTCTATATTCCTCCTAGAGGAGAAGGTTTGATCTCAACTAATGGCTGTCTCAGAGATGTCCATGCTTCGGTATGTTAGGACTCTAATCCTTTACATTTTGCTGCTACCTTGCTGGGGTCAAACGAGTCCAATTCCTTCCCTGGAGGAGCCATTTTCAGGAGGTCTTGGAGCAGTGGATGCATCTTTGCTGGATCAGGATGATAATGTGGACGTTCAGGCACTTCTAGGCCAGTTCCTCTACATGTTAAATTTAACAGAGCAAGATCCAAAGCCGAGGCCCCAGGCTGCCCGCACTGAGCCACCAGAGTACATGCTGGAACTGTACAACCACTACGCTAAGGATCGTAGCAACAGACCTGCAGCAAATATTGCACGGAGTTTCAAGAATGAGGACTCTTCCCCCTATAGCGTGACAAGAAGAggtgtgaggacacacccccTCATGTTCAATGTCTCCGTCCCACGTCATGAGCACATTATTGCCGCCGAGCTCCGCCTCTACATGCTGGTACATCGAGATCCTCAATGCAAAAATGATATTGACTGGAAGGTAACAGTTTTTGAGAGGCAAGTGGAAGGCGGTCCTTCATTTTGGCATTCTGAGGGTGGAACCGGGGAGAGCAATTTGACTGGTATGCAGGAGCTGGTGGTAAGGCATGGCCAGCTCAAAGAGAGCGGATGGGAGGTGTTCGATCTGACTGACGCTGTTCTGCGCTGGAGAGACCTGGAGACCATGAGCCACTGGCTTGAGCTACAGGTCGAAAGTGTAAATGAGAGTGAGCTACAGGATGAAGACAAGAGTGCTATTTTTATCAGCTTGGACATTGAAAGGAGTGCGGGAGGAAAGCATGAACCAGTGCTGATTGTCTTCTCAGATAATGAAAGTGATAAGGACCAGTCGAAGAAGATGATCCCAGAAGACAACACTGGCCTGTTCGATTTCAATGAATTGTTGGTAGATGAAAAGGACGACAGCAGCGAACAACAAAACGAGGCCCTTTTAATGCAAACACGCTCTAACATGATCTACGATAGTGCGCCGCGAACCCGCCGCAATGCCAAGGGAAACCAATGCAAGAGGACTGCGCTCTATGTGGATTTTAAAGAGATAGGCTGGGACTCGTGGATCGTTGCACCACCAGGCTTCGAGGCCTACACTTGTCACGGGGAGTGCAATTATCCATTACTTCCACAAGTGACGCCCACCAAGCACGCCATTATCCAAACACTGGTCAATTTGAAAAGCCCTCAGAAAGCCTCACGAGCATGTTGCGTGCCCACCAAGCTGGAACCAATCTCTCTGCTATATGAAAATGAGAACGGCCATGTCATTTTCCAGCACAAATACGAGGGCATGGTGGTGGCAGAGTGTGGCTGCAGATGAGATCTTCAAGCTCTCATAAACTCTCTCCCGAATCAGCTGACAACCCAAATAGACAAGAATGAGAGGCCTGATAAGATGATAAGATGACACCATGATCCACAATGATGTTGCCTTTGTGTGATAATTAACAACTCATCTAGCACCTCTTAGTAGaagtataaaaaatgtattgtgaGTAGCACAGTAGCATGCTGCTATGTGAAATATACAGACACATAACCTGGcatggaatggatggatgtcATGGAGCAAAAGAGATGTTATTGAAATTTCACTTAATGTATATCTGCTTTTTATAACGTAGACTAgtgctttttttattgtacaaaaatatttgctGCAGTCTAGAATACAGTGCTTTCAGATCTAtttcataattataataaagtgaaaaataacCTTGGTTTAAAACTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943914.2 True 1988 mRNA 0.46 2 4904210 4906752

Neighbor

gene id symbol gene type direction distance location
smad4a smad4,smad4a,LOC107668639,LOC107559658,LOC107741365,LOC108435141 coding downstream 5326 4887855 ~ 4898884 (-)
unc5c unc5c,LOC108277026,LOC108435138,LOC105911728,LOC106564027,LOC105025160,LOC106568183 coding downstream 181636 4571378 ~ 4722574 (-)
gdnfa gdnf coding downstream 536135 4362933 ~ 4368075 (-)
LOC113544760 NA coding downstream 611425 4291752 ~ 4292785 (-)
LOC113544759 NA coding downstream 616660 4286606 ~ 4287550 (-)
arvcfa LOC108276558,LOC108435143 coding upstream 25409 4932161 ~ 4947814 (-)
zdhhc8a LOC108277273 coding upstream 52572 4959324 ~ 4975141 (-)
LOC113544909 NA coding upstream 69685 4976437 ~ 4985219 (-)
gltpb LOC108277169,LOC108435149,LOC107679516,LOC107565272,LOC107730971 coding upstream 118403 5025155 ~ 5032642 (-)
srsf9 srsf9,LOC107560829,LOC100707309 coding upstream 174002 5080754 ~ 5085163 (-)
LOC117599392 NA non-coding downstream 1253 4901344 ~ 4902957 (-)
G263736 rfx3 non-coding downstream 17639 4882413 ~ 4886571 (-)
LOC117599362 NA non-coding downstream 37225 4807202 ~ 4866985 (-)
G263712 NA non-coding downstream 127702 4776294 ~ 4776508 (-)
G263705 NA non-coding downstream 185125 4710749 ~ 4719085 (-)
G263918 NA non-coding upstream 171097 5077849 ~ 5080642 (-)
G264183 NA non-coding upstream 615638 5522390 ~ 5522699 (-)
G264188 NA non-coding upstream 666250 5573002 ~ 5573292 (-)
G264201 NA non-coding upstream 720725 5627477 ~ 5667868 (-)
G264245 NA non-coding upstream 808530 5715282 ~ 5756562 (-)
G263262 phf12 other downstream 837827 4052989 ~ 4066383 (-)
akap1a NA other downstream 1276910 3567419 ~ 3627300 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 1936028 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 2144025 2679675 ~ 2760185 (-)
npffr1l3 LOC108276623 other upstream 9738 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 127116 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 340182 5246934 ~ 5251500 (-)
LOC113544902 LOC108276927,LOC108425189,LOC107706776,LOC107554527 other upstream 1347187 6253939 ~ 6275764 (-)
ttc28 ttc28,LOC107705044,LOC107602249,LOC107588927 other upstream 1928995 6835747 ~ 7044112 (-)

Expression


Co-expression Network