G263918


Basic Information

Item Value
gene id G263918
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5077849 ~ 5080642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU312739
gaaatttcaatttcaaatgtATTACTCATATTTCAGAGGCATGTTAACAGCAGCTTCTTAGTATTCCACTCATCCAGCATTTTAACTGGCTTCATTACATCTACCATGTATGGATTCCCTGCCtacaagcaaaaacaaaaatcgATCTGCCGTGTCCTTTGTAGCATTCCAGTTGACTAAGTGTTAAACAGCTTTGTTCTGCACCCAAAAAAGTTCTCAAGCGTAAGTCTTTGTATCTTTGTCATCACGTATGATGCGGACATCGTCAGTGCAATCTAGATTGAGTTTCCTCAAGTAATTCTGAAGAATGATGGTTCAAAgtcacatcaactgcctggttTCTCTTTGTTTGGACCCATGAACTCGACACCATCAATAGGGATGTCCTTTTCTTTGATAGCTTTGAACACAGGACTGATATTTCTTGAACAGTTCGGTGCATGGATCATCACCCCGGTCTCCTTTCAGGAACTTCTCGGCGAACCAGCGGTTAAAACACTGGTCATATTCGCGCTTCAGCTCAGTGCAGCCTTCACCCACGCTGTTCATTCTCAGCCAAAGAAACCAAAAATGGCAGAGAAGATAAGTTTCCTACAGTGTAGTCGAAACCAGATAAATTGCGCATTTATTTATGTGTCATAACCCCGAGCCGATCTCCAACCCCTTTCTCTTGACTTTGCGTCTTCGTACCACGTGATCAACAAACGGCGCAGGATGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312739 True 720 lncRNA 0.43 2 5077849 5080642

Neighbor

gene id symbol gene type direction distance location
gltpb LOC108277169,LOC108435149,LOC107679516,LOC107565272,LOC107730971 coding downstream 45207 5025155 ~ 5032642 (-)
LOC113544909 NA coding downstream 92630 4976437 ~ 4985219 (-)
zdhhc8a LOC108277273 coding downstream 102708 4959324 ~ 4975141 (-)
arvcfa LOC108276558,LOC108435143 coding downstream 130035 4932161 ~ 4947814 (-)
LOC113544870 LOC108276621 coding downstream 171097 4904210 ~ 4906752 (-)
srsf9 srsf9,LOC107560829,LOC100707309 coding upstream 112 5080754 ~ 5085163 (-)
epb41l4a epb41l4a,LOC107653778,LOC107692020,LOC107709672 coding upstream 35346 5115988 ~ 5168295 (-)
LOC113544764 NA coding upstream 137021 5217663 ~ 5221213 (-)
mfsd14ba LOC108277206,LOC108441064,LOC103035434,LOC557306,LOC107687378,LOC107665788,LOC107568610 coding upstream 511005 5591647 ~ 5611219 (-)
pdxp pdxp coding upstream 628853 5709495 ~ 5716927 (-)
LOC117599392 NA non-coding downstream 174892 4901344 ~ 4902957 (-)
G263736 rfx3 non-coding downstream 191278 4882413 ~ 4886571 (-)
LOC117599362 NA non-coding downstream 210864 4807202 ~ 4866985 (-)
G263712 NA non-coding downstream 301341 4776294 ~ 4776508 (-)
G263705 NA non-coding downstream 358764 4710749 ~ 4719085 (-)
G264183 NA non-coding upstream 441748 5522390 ~ 5522699 (-)
G264188 NA non-coding upstream 492360 5573002 ~ 5573292 (-)
G264201 NA non-coding upstream 546835 5627477 ~ 5667868 (-)
G264245 NA non-coding upstream 634640 5715282 ~ 5756562 (-)
LOC117599320 NA non-coding upstream 814097 5894739 ~ 5901406 (-)
npffr1l3 LOC108276623 other downstream 151199 4916490 ~ 4926650 (-)
G263262 phf12 other downstream 1011466 4052989 ~ 4066383 (-)
akap1a NA other downstream 1450549 3567419 ~ 3627300 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 2109667 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 2317664 2679675 ~ 2760185 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 166292 5246934 ~ 5251500 (-)
LOC113544902 LOC108276927,LOC108425189,LOC107706776,LOC107554527 other upstream 1173297 6253939 ~ 6275764 (-)
ttc28 ttc28,LOC107705044,LOC107602249,LOC107588927 other upstream 1755105 6835747 ~ 7044112 (-)
G265153 NA other upstream 2167511 7248153 ~ 7249074 (-)
hic2 hic2,LOC107548988,LOC107665789,LOC107602240,LOC107704150 other upstream 2169061 7249703 ~ 7260786 (-)

Expression


Co-expression Network