LOC113544764


Basic Information

Item Value
gene id LOC113544764
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5217663 ~ 5221213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943700.2
TGGGTTCTTTCTGGACTCTGTATCGCATCATTGCACTCAGACCCAGGCGAGGATTAGCACAGAGGCAATGAATTTGGCCCGGATTCATGACAAACAAAAGCTAAAGAAATTTTGGGAGCAGAAGATAGAGAGACACCATCAGATGACTGGGAAGGAAGAAGCCAGAATGAAGAGGAGCGCTTTATCAAAGTTACGGAAGGAGTGGATCCAGAGGCTGCTGATTCGGAGCCATGGCGTGAACGGAAATATGAGCggagaggaaatgaaaaaggATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943700.2 True 277 mRNA 0.47 3 5217663 5221213

Neighbor

gene id symbol gene type direction distance location
epb41l4a epb41l4a,LOC107653778,LOC107692020,LOC107709672 coding downstream 49368 5115988 ~ 5168295 (-)
srsf9 srsf9,LOC107560829,LOC100707309 coding downstream 132500 5080754 ~ 5085163 (-)
gltpb LOC108277169,LOC108435149,LOC107679516,LOC107565272,LOC107730971 coding downstream 185021 5025155 ~ 5032642 (-)
LOC113544909 NA coding downstream 232444 4976437 ~ 4985219 (-)
zdhhc8a LOC108277273 coding downstream 242522 4959324 ~ 4975141 (-)
mfsd14ba LOC108277206,LOC108441064,LOC103035434,LOC557306,LOC107687378,LOC107665788,LOC107568610 coding upstream 370434 5591647 ~ 5611219 (-)
pdxp pdxp coding upstream 488282 5709495 ~ 5716927 (-)
mier3a mier3,mier3a,LOC108277354,LOC108441071,LOC107568605 coding upstream 502642 5723855 ~ 5736620 (-)
ash2l ash2l coding upstream 538967 5760180 ~ 5770564 (-)
ddx56 ddx56,LOC107733287 coding upstream 584281 5805494 ~ 5821679 (-)
G263918 NA non-coding downstream 137021 5077849 ~ 5080642 (-)
LOC117599392 NA non-coding downstream 314706 4901344 ~ 4902957 (-)
G263736 rfx3 non-coding downstream 331092 4882413 ~ 4886571 (-)
LOC117599362 NA non-coding downstream 350678 4807202 ~ 4866985 (-)
G263712 NA non-coding downstream 441155 4776294 ~ 4776508 (-)
G264183 NA non-coding upstream 301177 5522390 ~ 5522699 (-)
G264188 NA non-coding upstream 351789 5573002 ~ 5573292 (-)
G264201 NA non-coding upstream 406264 5627477 ~ 5667868 (-)
G264245 NA non-coding upstream 494069 5715282 ~ 5756562 (-)
LOC117599320 NA non-coding upstream 673526 5894739 ~ 5901406 (-)
git2b git2,LOC108277167,LOC108435150 other downstream 60354 5033868 ~ 5157309 (-)
npffr1l3 LOC108276623 other downstream 291013 4916490 ~ 4926650 (-)
G263262 phf12 other downstream 1151280 4052989 ~ 4066383 (-)
akap1a NA other downstream 1590363 3567419 ~ 3627300 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 2249481 2965655 ~ 2968182 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 25721 5246934 ~ 5251500 (-)
LOC113544902 LOC108276927,LOC108425189,LOC107706776,LOC107554527 other upstream 1032726 6253939 ~ 6275764 (-)
ttc28 ttc28,LOC107705044,LOC107602249,LOC107588927 other upstream 1614534 6835747 ~ 7044112 (-)
G265153 NA other upstream 2026940 7248153 ~ 7249074 (-)
hic2 hic2,LOC107548988,LOC107665789,LOC107602240,LOC107704150 other upstream 2028490 7249703 ~ 7260786 (-)

Expression


Co-expression Network