G311599 (hoxc11,LOC106565461,LOC108276183)


Basic Information

Item Value
gene id G311599
gene name hoxc11,LOC106565461,LOC108276183
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20967715 ~ 20968865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369043
TGCATATATTCAACGTTTCCTTCCCCTTTTCACCGCGTAACATGTAAACAGCTAGCATAAACAACAGCTTACAATGGTATAGAAATAGAAAACCCTGCAGCCTTCTCTTCGCTTTCCAGTTCTCTAGAGTGGATAATGCAAATGTAAAAGAaattcaaagaaaaataaaaagtacatattTACAGTGAGTAATAATACACAATGGTGATTAATCATATTGCATAGTCTCAAAGGTGGGCATTTTCCTGtaaataaaaagtctacacgagtcaaatgaataataataataataataataataataataataataatccTAGAGACAATCACAACTTCATCGATACGTCCATTACAATAAGTCAAGGGCAATTCAGAGTAAAATAGTTATAGTTGATGGAAAGTTCCACTGAAACCTAATTCTTTATTAGAAAAAGGTGTTCTACATGATGGAAATGGCCTTCTTTAGGTATAACTCTCTTAACATCATTTATGCTTAAGATTCTTGGTATTATAAAGCAAGATatgctggggaaaaaacatataatatgTCCATAAAAGTCCCAACTTTTGTGTATGCAACAACCAAGTACTAAAATCAGACTGTCTTCATTGTGATTCAATTTTGCATTGAAATTTTTGGGAATTATTATAATATCCGGtatatgaggggaaaaaaaaacaacacagttcACAAAAGAGGGTTACCGGAAAAATACTGCAGGCGATCTCGGCTTAATTTCTTCTCTTTCATTCGTCGGTTTTGGAACCAGATTTTCACCTGTCGGTCGGTGAGGTTCAGCATGCGCGAGAGCTGCAGCCGCTTCTCTttgttgatgtaaacattaaagaAGAACTCGCGTTCGAGCTCCCGGATCTGAAACTTGGTGTAGGGGCATCGCTTCTTCCGCGTCCGAGTGGCACCTTAAAATTTAAGATagaagaaatatattttaaaaaataatatttttaaatggaaaaaaacccaaataaataacagaaaacgGCCTAGGTCAAAGGTCAGTAAGAAATAAACCACATTGTGCTATAGGCTGTGTATTTCCCACCCTGTTAATCACCACGAGCAAGAACAGTAACATGTA

Function

symbol description
hoxc11 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369043 True 1100 lncRNA 0.35 3 20967715 20968865

Neighbor

gene id symbol gene type direction distance location
smug1 smug1 coding upstream 66304 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 306026 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 317542 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 346476 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 364651 20596752 ~ 20603064 (+)
calcoco1b LOC108255279 coding downstream 64258 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 144569 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 168944 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 242387 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 441911 21410776 ~ 21435824 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding upstream 16177 20948321 ~ 20951538 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding upstream 24086 20932678 ~ 20943629 (+)
G311488 NA non-coding upstream 29834 20903312 ~ 20937881 (+)
G311486 NA non-coding upstream 82874 20882446 ~ 20884841 (+)
G311489 NA non-coding upstream 124260 20842278 ~ 20843455 (+)
LOC113538073 NA non-coding downstream 37485 21006350 ~ 21012460 (+)
G311649 NA non-coding downstream 181933 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 190592 21159457 ~ 21164926 (+)
G311653 NA non-coding downstream 193053 21161918 ~ 21164080 (+)
LOC117599907 NA non-coding downstream 198115 21166980 ~ 21185039 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 85350 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 106988 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 790443 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1099234 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1183790 19768983 ~ 19783925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01139343_01141069 HOXC11B coding CI01000057 null 1139039 ~ 1141438 (+)