G311652


Basic Information

Item Value
gene id G311652
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21159457 ~ 21164926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369113
cgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACGCcgtactatagactgtggaatatataccgcgTTACGCTACGCcgtactatagactgtggaatatatattGCGCGTTACGCTACGCcgtactatagactgtggaatatataccgcgCGTTACGCTACgctgtactatagactgtggaatatataccgcgTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACGCcGTACTATAGACTGTAGAATGTTTGGTTAGATTTAGTATTAGCAGGACAGCTAACATTTATCTGGTTAAAGTCATCAGTGAGTTTTGCTTTATTTGCACACGCAGACAGAGAAATAAcgtaaatgattaaaatacgCTGCTGGACTTCTCCTTTAACGTTACCGTGTCGGTGTCTCTGATCCAGGGCCGGCCGTTCTGCAGGTATTTCCCCTGAttctgtctcttcttctgtcCTCCGTCAGCAAATTTACATAACAACGGCTCCGTCGGCACTAAAATACAAACCAGCGTGAGTCCAAAGATTCTCAATGCGCCATCAAAGATTCTCAAAGATTAATTTCTCCAACAAGACCCGTTCTTCACTAAATACTAGTGTGTAGACagtgaaattgtgtgtgtgtgtgtgtgtgtgtgtgacagagatcAGTGCTGACAACTGAGACATAACTTGTACAGAAACATCAGACTGAGATCCTGATTGGTTACACACACCTGACCTCTGACTGAAggccactcac
>TU369114
ccgcgCGTCACACTACgctgtactatagactgtggaatatataccgcgcgTTACGCTACgctgtactatagactgtggaatatataccgcgCGTTACGCTACGCcGTACTATAGACTGTAGAATGTTTGGTTAGATTTAGTATTAGCAGGACAGCTAACATTTATCTGGTTAAAGTCATCAGTGAGTTTTGCTTTATTTGCACACGCAGACAGAGAAATAAcgtaaatgattaaaatacgCTGCTGGACTTCTCCTTTAACGTTACCGTGTCGGTGTCTCTGATCCAGGGCCGGCCGTTCTGCAGGTATTTCCCCTGAttctgtctcttcttctgtcCTCCGTCAGCAAATTTACATAACAACGGCTCCGTCGGCACTAAAATACAAACCAGCGTGAGTCCAAAGATTCTCAATGCGCCATCAAAGATTCTCAAAGATTAATTTCTCCAACAAGACCCGTTCTTCACTAAATACTAGTGTGTAGACagtgaaattgtgtgtgtgtgtgtgtgtgtgtgtgacagagatcAGTGCTGACAACTGAGACATAACTTGTACAGAAACATCAGACTGAGATCCTGATTGGTTACACACACCTGACCTCTGACTGAAggccactcac
>TU369115
cgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACactgtactatagactgtggaatatataccgcgTCACGCTACgctgtactatagactgtggaatatatacaccgcgTTACGCTACGCcgtactatagactgtggaatatatattGCGCGTTACGCTACGCcgtactatagactgtggaatatataccgcgCGTTACGCTACgctgtactatagactgtggaatatataccgcgTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACactgtactatagactgtggaatatataccgcgCGTTACGCTACGCcgtactatag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369113 True 830 lncRNA 0.44 3 21159457 21164926
TU369114 False 622 lncRNA 0.44 3 21161473 21164926
TU369115 False 365 lncRNA 0.45 2 21159457 21159955

Neighbor

gene id symbol gene type direction distance location
faim2b LOC108255062 coding upstream 10173 21137809 ~ 21149284 (+)
LOC113537842 LOC108255161 coding upstream 24323 21113434 ~ 21135134 (+)
calcoco1b LOC108255279 coding upstream 112880 21033123 ~ 21046577 (+)
smug1 smug1 coding upstream 258046 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 497768 20654185 ~ 20661689 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 46326 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 245850 21410776 ~ 21435824 (+)
poc1a poc1a,LOC107747840 coding downstream 278373 21443299 ~ 21483333 (+)
dusp7 dusp7,LOC107697567,LOC107677944 coding downstream 326964 21491890 ~ 21510998 (+)
rpl29 NA coding downstream 377828 21542754 ~ 21545334 (+)
G311649 NA non-coding upstream 4356 21150798 ~ 21155101 (+)
LOC113538073 NA non-coding upstream 146997 21006350 ~ 21012460 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding upstream 175946 20927003 ~ 20983511 (+)
LOC117599907 NA non-coding downstream 2054 21166980 ~ 21185039 (+)
G311665 NA non-coding downstream 26242 21191168 ~ 21191629 (+)
G311946 NA non-coding downstream 212934 21377860 ~ 21391093 (+)
G311972 NA non-coding downstream 319613 21484539 ~ 21484817 (+)
G311977 NA non-coding downstream 349545 21514471 ~ 21523897 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 277092 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 298730 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 982185 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1290976 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1375532 19768983 ~ 19783925 (+)

Expression


Co-expression Network