G311946


Basic Information

Item Value
gene id G311946
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21377860 ~ 21391093 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369497
TGAATTCTTTCAAGTGCCTTGGACACTATCTCAGTGGAGGAAGCATCTTTAAGATCACAGGTGACTGCTGATGTAACTACCTTTTGGTAGAGATGAGTTAAGGCTCTGAGGGCGTGAGCTTCGAGATTGACCTGATGAGTTCCTCTGGACCGTGCTGACACCTTAACCGAGCCGTGGACAGGTTCAGCATCAAACTGAACTCCATATTTATTTTGGATCTCAGAAATCTGTTTCTCAAACGCAATCTTCAGCAGTTGCCAGTGTGCCACATCCATCTCAGCTGCAGCTTGAGTGTCCTTGATGTCCATGTCCAAGTTCTTTGGGGTCTGCACTGAAGTCCTATTGCTAGATGTCTCCATGTTATGTGACTCTCTGTGGCTAAATGGTGTTGCTAGATCATCACCAGGTTCCAATTTTATCCGCTTCTCAACCACTGATGTTATTTCTCCTGGTCCAAACAGCAGGTATTCATTTGCTGACATGCTTAGCATGATCCTGTGCTCTTCATTTGGAATATTACGCAGTGTCTCTTTCATGATGTCagactgcatgtgtgtttgagggaCAGAAACAGATTTGAGATTCTTTGTAGTATTCTGGACAAGAGTAGAAAAGGCCTGAGTAGCTTTGCTGAAAGAATCACTCTCACTCTTCACCATAGCTTTCGCAGCAGAGAGTGAAAGACgtgtttctgcatttattttaactCCAAACACATTCTCAAATTGTTCCAGCTCCTTCCTGTAAGCTTGACTCAGGTACCAGTATAGAAAGGGAGGGACAGTAAAAGCATCAGAAGCTCCAGTCATCTCATTAGAAGCAGCTCCTGCATCCTTCATGAGCTCAGGTGGGGTTGTTTCTGTAGCAGTCACAttaactCCAAACTCATTCTCAAATTGTTCCAGCTCCTTCCTGTAAGCTTGACTCAGGTACCAGTATAGAAAGGGAGGGACAGTAAAAGCATCAGAAGCTCCAGTCATCTCATTAGAAGCAGCTCCTGCATCCTTCATGAGCTCAGGTGGGGTTGTTTCTGTAGCAGTCACAGCTGTCTCATGCATGTTCTCCTAATAAATATGgaaatacacatttatacaaTATTACTGATAGCCAAATTATACAACTCGCATTATAacgtacagtcaggtccataaatattgggacatcgacacaattctaacatttttggctctatacaccaccacaatggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369497 True 1209 lncRNA 0.43 2 21377860 21391093

Neighbor

gene id symbol gene type direction distance location
lrp1aa LOC108281054,LOC108424569 coding upstream 6190 21211252 ~ 21371670 (+)
faim2b LOC108255062 coding upstream 228576 21137809 ~ 21149284 (+)
LOC113537842 LOC108255161 coding upstream 242726 21113434 ~ 21135134 (+)
calcoco1b LOC108255279 coding upstream 331283 21033123 ~ 21046577 (+)
smug1 smug1 coding upstream 476449 20896980 ~ 20901411 (+)
alas1 alas1 coding downstream 19683 21410776 ~ 21435824 (+)
poc1a poc1a,LOC107747840 coding downstream 52206 21443299 ~ 21483333 (+)
dusp7 dusp7,LOC107697567,LOC107677944 coding downstream 100797 21491890 ~ 21510998 (+)
rpl29 NA coding downstream 151661 21542754 ~ 21545334 (+)
G311665 NA non-coding upstream 186231 21191168 ~ 21191629 (+)
LOC117599907 NA non-coding upstream 192821 21166980 ~ 21185039 (+)
G311652 NA non-coding upstream 212934 21159457 ~ 21164926 (+)
G311653 NA non-coding upstream 213780 21161918 ~ 21164080 (+)
G311649 NA non-coding upstream 222759 21150798 ~ 21155101 (+)
G311972 NA non-coding downstream 93446 21484539 ~ 21484817 (+)
G311977 NA non-coding downstream 123378 21514471 ~ 21523897 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 495495 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 517133 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 1200588 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1509379 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1593935 19768983 ~ 19783925 (+)

Expression


Co-expression Network