LOC113538055


Basic Information

Item Value
gene id LOC113538055
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18596516 ~ 18601724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403812.2
CCTCGCGCTCATGCTCGCTCGCTCAGGCTCAAGTGCACTTTCCTCGCGCGCGACAACCCGGTGCAGTGAAATGCCTGAAAACATTCCGGAAATAAAAGGGGAGAAAGTCTCCTCtggtgcatgttctccccgggTCCGGGTCCGGGTGCgattcctccgggttctccggtttcctcctacctccccaAAACATACCAATAGGTAGACTGACTAAACTgccccagAGAAAACACGTGAAAATCAGAGGAATGGAGGAGGCAGGGCGGGTGGTAGACAGTACCTTGTATAGCATGGGAATGCAAAGCACAAGATTAAAATCTCCATTCCTGGTTGATCCCGTTGGGAAATTAATCCTGAAAAAACAAGTACGCTGGAGCCCTGCTGCCCCTCCAGCACAGGGCACATTGAGGGCAGGGCAGCTCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403812.2 True 426 lncRNA 0.54 3 18596516 18601724

Neighbor

gene id symbol gene type direction distance location
pdrg1 pdrg1,LOC107550337,LOC107580937 coding upstream 31705 18560022 ~ 18564811 (+)
si:ch211-266k22.6 LOC108255298 coding upstream 37835 18553402 ~ 18558681 (+)
phactr3b phactr3,LOC108254891 coding upstream 55790 18477084 ~ 18540726 (+)
si:ch73-303b9.1 LOC108254896 coding upstream 141596 18453810 ~ 18454920 (+)
ghrh ghrh coding upstream 169329 18420459 ~ 18427187 (+)
hp1bp3 hp1bp3 coding downstream 35869 18637593 ~ 18645518 (+)
sh2d5 sh2d5 coding downstream 44987 18646711 ~ 18654039 (+)
kif17 kif17,LOC108438632 coding downstream 52445 18654169 ~ 18670459 (+)
LOC113537968 sox13 coding downstream 107018 18708742 ~ 18741557 (+)
si:ch211-112f3.4 LOC108254938 coding downstream 189202 18790926 ~ 18803902 (+)
G310183 LOC105009000,LOC107722005,LOC107551326,LOC107654800,LOC107670934 non-coding upstream 125492 18467803 ~ 18471024 (+)
G310208 mybl2 non-coding upstream 151482 18444085 ~ 18445034 (+)
G310201 NA non-coding upstream 165926 18427425 ~ 18430590 (+)
G310084 NA non-coding upstream 474261 18122030 ~ 18122255 (+)
G310007 NA non-coding upstream 553002 18040882 ~ 18043514 (+)
G310416 NA non-coding downstream 654 18602378 ~ 18602580 (+)
G310420 NA non-coding downstream 11791 18613515 ~ 18615654 (+)
G310421 NA non-coding downstream 14966 18616690 ~ 18617001 (+)
G310425 NA non-coding downstream 29991 18631715 ~ 18631944 (+)
G310446 NA non-coding downstream 137242 18738966 ~ 18809037 (+)
LOC113537865 LOC108280979 other upstream 1332853 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2094832 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2796626 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4071540 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 4119699 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 85673 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 485301 19087025 ~ 19087806 (+)
svbp NA other downstream 893034 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 906465 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 1167259 19768983 ~ 19783925 (+)

Expression


Co-expression Network