rdh10b (rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055)


Basic Information

Item Value
gene id rdh10b
gene name rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 868721 ~ 873766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941381.2
TAATGAGAagttagaggtgtgtgtgtgtgtgtgtgtgcgcgcgctgcAGAAGTCGATCGGATGATagtttagctgtgtgtgtgtgtgtgtgtgtgtttagatcgGATCATCTGCACTGAGACTCGGTTTCAGATCAAACTTTCTACAGAAACTTTGTCGGTAGTCGGCAGTGAGGCGGTTGATGATGCACATCGCGGCGGAGTTCTGCGTGGTTTGCGTGAAGGTGCTCTGGTCGTTCGCGGCGGCGGCGGCGCGGTGGCTCGTGAAACCGCGGGAGAAGCGCGTGCAGGGCCGCGTGTGCGTGATCACCGGGGCCGGAAGTGGACTGGGCCGCCTGTTCGCGCTGCACTTCGCCCGCAGAGGAGCCACGCTCGCGCTCTGGGACATCAACCGCACCGCCAACGAGGAGACCGCGGAGCTCGTGCGCGAAATCTACCGACAAAACACCACCGACACGAGCAACACCTGTACAGgttcAGACGACAGCGTTGAGGAGTTGCCCGCGTTCCAGCCGCGGGTTTACACGTACGTGTGTGACGTGAGTAAGCGTGAGAGTGTGTACGCCACGGCCGAGCAGGTGAGGAGAGAGGTAGGAGACGTCACGTTCCTCGTCAACAACGCCGGCGTGGTTTCAGGACGTCACCTCCTCGAGTGTCCCGACGAACTGATCGAGAGGACCATGATGGTCAActgccacgcccacttctggACCACGAAAGCTTTTCTCCCGAAGATGCTGGAGTTAAACGAGGGCCACATCGTGACTGTGGCCAGCTCTCTGGGTCTCTTCACCACGGCCGGGGTCGAGGATTACTGCGCGAGCAAATTCGGCGCCATCGGCTTCCACGAGTCGCTGAGCCACGAGTTAAAGGCGGCGAACAAAGACGGGATCAAGATGACGCTGGTGTGTCCGTTCCTGGTCGATACGGGGATGTTTAAAGGCTGCGAAATCAGGAAGGAGATCGCGCCGTTTTTCCCGCCGCTGAACCCCGAGCACTGCGTGGAGCGAGCCATGAGAGCCATTCTGACGGATCAGCCGATGGTCTGCACGCCGCGCGCCATGTACGCCGTCACCTTCATGAAAACGATTTTGCCGTTCGACGCCATCGTGTGCATGTACCGCTTCCTCGGCGCTGATAAATGCATGTACTCCTTCCTGGCTCATCGGAAAGAATCCACCAACAACAACGAGTCGAAGATCAGCATGTAGTCGCTCGGATCTTCTGTGATATCGCCTTACATCTCTAACGCTCTGGTTCATTTGGAGCAAAAAATAAGAACTGTAATTACAATGCTTAGAAAACTATGGATTTTGTTAAGCTGCCTACACATTTCCGTTTTTAAACCTGATAATTTAATCTTCTACAGATTAGATATGTGCCgatatgatatatttttgccTCGATAATtgcctacattttttttaagaaagaaaatctCACAGGAAAAATCTGACTTATTGTTCAAGCTGTAACAAGCAGGTGTTAtcgcatcataaaatataagaaccaatcagatttcagtatGCAAATGCAGTAAGTACCGGTTTAGCAGGGGAAAGGGGCGGGGTGTGTGTACGAGTGGGTTTTGGATTTGcataacttttttgtttttgtgttttttttcattatattgcattttaaataatgacctTATGTTCTCATTTTGACACCTGCTTCTGATGTTTCCACTAAACATGTCCTCTAGACGACGACCTTCGCTGCGCTCTGAACCGGACAGAAATATCGGCACATGTCTTTATAAAGTCCTCTGATCAGCTTGATTATGAAATAATGCAGTATGTTACTGTAATAGTGTACactatctttatttatatataattatttgtaatttctGTCTTGTTCGATTCCACACTGTGACCAAACGTTTATTTGTTACTTTAGACATTGTTCTTTTTctgaaaactttaaaaatgtattgtattgttttcaAAGGTGCAATATGTATCATTCctacaataaatattttatcctaaaaaa

Function

symbol description
rdh10b Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in retinol metabolic process. Predicted to act upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; notochord; pleuroperitoneal region; tail bud; and yolk syncytial layer. Orthologous to human RDH10 (retinol dehydrogenase 10).

NR:

description
PREDICTED: retinol dehydrogenase 10-B isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941381.2 True 2000 mRNA 0.49 6 868721 873766

Neighbor

gene id symbol gene type direction distance location
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 140856 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 174383 683806 ~ 694338 (+)
mre11a mre11a coding upstream 190939 616718 ~ 677782 (+)
LOC113543345 LOC108280375,LOC108280376 coding upstream 307584 545670 ~ 561137 (+)
LOC113543344 LOC108280269 coding upstream 346695 505627 ~ 522026 (+)
tmem70 tmem70 coding downstream 24292 898058 ~ 901624 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 73026 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 130143 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 180102 1053868 ~ 1066467 (+)
cahz cahz coding downstream 477497 1351263 ~ 1357482 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 2000 862387 ~ 866721 (+)
G312517 NA non-coding upstream 45975 821262 ~ 822746 (+)
G312277 NA non-coding upstream 109393 715639 ~ 759328 (+)
G312283 NA non-coding upstream 125592 739463 ~ 743129 (+)
G312280 NA non-coding upstream 156424 711494 ~ 712297 (+)
G312531 NA non-coding downstream 1897 875663 ~ 875880 (+)
G312534 NA non-coding downstream 9638 883404 ~ 886114 (+)
G312540 NA non-coding downstream 32468 906234 ~ 906446 (+)
LOC117599981 NA non-coding downstream 102855 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 216092 1089858 ~ 1104324 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 21704 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 151430 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 367332 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 549759 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 675187 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 255143 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1091974 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1259384 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1308213 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1781434 2655200 ~ 2662399 (+)

Expression


Co-expression Network