G312509 (rpl7,LOC107664057,LOC107584398)


Basic Information

Item Value
gene id G312509
gene name rpl7,LOC107664057,LOC107584398
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 862387 ~ 866721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370220
ctgTTTGTTCACTTGGTTCACCTTCAGTTCATCCTCCTGATGAGTCTGTTGATCTGGTCCTCTCGGTTCCCGGCGTCTCCTCCCTCCACAAAGTGAGTGGTCTTCTTGTTCATGCCACCGCGAGGAGACGACAGCTTGAAGGGCCAGAGGAAGTTGTTGGCGGCTTTGAAGTTCCTGCCGACGGTGTAGATCTCGTGGATCAGATCTTCCATGCAGATGATTCCATATGAACCTGcaATGGTCTTCTCGATGAGCGAGTTATCTGTCAGAGGAATGCGCTGCTTGTTGATCTTGCCGTATCCGCGCTTGTAGATGAGCTCGCGCACAGACTTCAGGTTGGGGTCACCCCCAGGCGATGTACGGCTCGGCGATACGCAGCATGTTGATGGAGGCCTTGTTGAGCTTGACGAAGACGCCGTTAAAGATCTGGCGCAGACGCAGGAGCTGCAGAACCTTACGCACTTTAGGGCTCACGCCGTTGATACTGCGGagggagagaaacacacacacacacacacacgttaacaCACCTTCGCTTAGACTCGTCTGTTCGCAGTGAAACACAGCGGTGTGGTTTCAGTGAGACTGGCTGATTAGCAGAGGAATCACCACGGTCGATATGACGGGGAAAAAAGAGCTGCATCATTAACCACCACGTTACAGAAGGAACATTTCACCCAGAACACCACTGTACTGTTCACATCTGGAAACATCTGGAAACTAAAACTGCACCCatagcgcgcgcacacacgcagaaagaaggaaaaaaaacattttgaccaCTGAGCAGAATCTCAGAGTTCTCTAATAAACACGATCGCTTAATTAATCAGATTTTTAGTCCGGATGTAAACACAGGTTTAGTCTTTGTTTAGtcttcattaatttaaaaataaagtttctaTCGCTTCTTTAACTTTTATCGTTATCTATATTTCATCATTCACTCCCGAGAAAATTTATTCAAAGCGTAATTTATTCACGTTCtggtttttttctgtaattaaaaaaaagtcgcTCATGAAGCAAAGATGTAAAAGTTCGGGTGAAATGTTCCTCAGGACTGACAGCGTAACCTCCCTGTAGAGGTAACCCTCACCCTCTGATCCGGATAACGAAGGCCAGTTTGGGCTCAGCGGGGACGTAGAAGTTTCCGGCTTTGCGAGCCATGCGGTTCATGCGGATCTCGCGCCTGTACATCTGCCGGTACTCTTTGTGGTAGAACTGCGCTCTGGCGTAGATCAGGTTCCGGGTGATTTTGCGATtctTCTTCTTCAAGAGGCCTTCGGGGACTGACGGAACTTTCTTCTCCTTcgtctctttcttctccttcgCCGCCTCTTTCGtctccttcttctctctgtaaacaaacacagacGCAACGTCAGGACAAAACGCTACGACTTTCTGAAGACCACGACTCGTACAAAAAAAAGTTCGACTCAGCAGTCGAGTGTCTCATCAGTGAGATGAAATTCttgaacataaaacataaaagtaaCTGTTTATAGcgttaattataattaaacatctttattgcaccattttaatttaacatacaTTTGAGTTTATTCTATAACTGCATActtattttattcatctttatccttgtgcatttcattacattCAATTTTAACATTcacactattttaTTTGTGActctaaaacactttttaacacCTTTTATAGCAGATTAACAATAGATTAAGCAACTTAATTGGTGTTAActcataaaaataaacttttcagGACAGAATTAAAGGAATTTTATGATCAAGCTGCAAAAATTCCACATGCAATGTGACAAGACATGAAGCAGAACATTCAGATGGGAATGTTTATTGCTAAATTTGGTTATTTTTCCCTTTCCAGTGACTGCAAACAAACACTAatgaagcaaaataaataataataactaataaaatgGTGACCATCATGAGACTAACACAGGTAACGCTAGTGCTTAGCATCCAGCTAACACAGGTGTAGTGTCCTGATAAACACACCACTGTAGAACATGAGGTATTACTGTAACATTAATTTAGCTCAAAATTTATTCTGTatgattgttttattgtaaaaataaatgcttttattcaGTTAAACTCTCTCACTAGCTACAGGCCAGTTAACATCACGTTGCTAATGCTACACTGATCCAGGCACTACCATCTTTAACATcaacttttatacactttatactcATTATCCGTCACTAATATCGACTTTAGAACACACATAAGTGTTTAAACATTATTCTCCATCTGAGATTGACAGCGAACAGACACCACAGACGCCGATGGAAGAAGATTTAAACGACAAGACAGTCGACTTACGTTTCACCCGCCATTATGCC

Function

symbol description
rpl7 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370220 True 2356 lncRNA 0.42 5 862387 866721

Neighbor

gene id symbol gene type direction distance location
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 134522 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 168049 683806 ~ 694338 (+)
mre11a mre11a coding upstream 184605 616718 ~ 677782 (+)
LOC113543345 LOC108280375,LOC108280376 coding upstream 301250 545670 ~ 561137 (+)
LOC113543344 LOC108280269 coding upstream 340361 505627 ~ 522026 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding downstream 2000 868721 ~ 873766 (+)
tmem70 tmem70 coding downstream 31337 898058 ~ 901624 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 80071 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 137188 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 187147 1053868 ~ 1066467 (+)
G312517 NA non-coding upstream 39641 821262 ~ 822746 (+)
G312277 NA non-coding upstream 103059 715639 ~ 759328 (+)
G312283 NA non-coding upstream 119258 739463 ~ 743129 (+)
G312280 NA non-coding upstream 150090 711494 ~ 712297 (+)
G312221 NA non-coding upstream 285464 574241 ~ 576923 (+)
G312531 NA non-coding downstream 8942 875663 ~ 875880 (+)
G312534 NA non-coding downstream 16683 883404 ~ 886114 (+)
G312540 NA non-coding downstream 39513 906234 ~ 906446 (+)
LOC117599981 NA non-coding downstream 109900 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 223137 1089858 ~ 1104324 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 15370 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 145096 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 360998 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 543425 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 668853 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 262188 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1099019 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1266429 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1315258 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1788479 2655200 ~ 2662399 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location