RNA id: TU370220


Basic Information

Item Value
RNA id TU370220
length 2356
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G312509
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 862387 ~ 866721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgTTTGTTCACTTGGTTCACCTTCAGTTCATCCTCCTGATGAGTCTGTTGATCTGGTCCTCTCGGTTCCCGGCGTCTCCTCCCTCCACAAAGTGAGTGGTCTTCTTGTTCATGCCACCGCGAGGAGACGACAGCTTGAAGGGCCAGAGGAAGTTGTTGGCGGCTTTGAAGTTCCTGCCGACGGTGTAGATCTCGTGGATCAGATCTTCCATGCAGATGATTCCATATGAACCTGcaATGGTCTTCTCGATGAGCGAGTTATCTGTCAGAGGAATGCGCTGCTTGTTGATCTTGCCGTATCCGCGCTTGTAGATGAGCTCGCGCACAGACTTCAGGTTGGGGTCACCCCCAGGCGATGTACGGCTCGGCGATACGCAGCATGTTGATGGAGGCCTTGTTGAGCTTGACGAAGACGCCGTTAAAGATCTGGCGCAGACGCAGGAGCTGCAGAACCTTACGCACTTTAGGGCTCACGCCGTTGATACTGCGGagggagagaaacacacacacacacacacacgttaacaCACCTTCGCTTAGACTCGTCTGTTCGCAGTGAAACACAGCGGTGTGGTTTCAGTGAGACTGGCTGATTAGCAGAGGAATCACCACGGTCGATATGACGGGGAAAAAAGAGCTGCATCATTAACCACCACGTTACAGAAGGAACATTTCACCCAGAACACCACTGTACTGTTCACATCTGGAAACATCTGGAAACTAAAACTGCACCCatagcgcgcgcacacacgcagaaagaaggaaaaaaaacattttgaccaCTGAGCAGAATCTCAGAGTTCTCTAATAAACACGATCGCTTAATTAATCAGATTTTTAGTCCGGATGTAAACACAGGTTTAGTCTTTGTTTAGtcttcattaatttaaaaataaagtttctaTCGCTTCTTTAACTTTTATCGTTATCTATATTTCATCATTCACTCCCGAGAAAATTTATTCAAAGCGTAATTTATTCACGTTCtggtttttttctgtaattaaaaaaaagtcgcTCATGAAGCAAAGATGTAAAAGTTCGGGTGAAATGTTCCTCAGGACTGACAGCGTAACCTCCCTGTAGAGGTAACCCTCACCCTCTGATCCGGATAACGAAGGCCAGTTTGGGCTCAGCGGGGACGTAGAAGTTTCCGGCTTTGCGAGCCATGCGGTTCATGCGGATCTCGCGCCTGTACATCTGCCGGTACTCTTTGTGGTAGAACTGCGCTCTGGCGTAGATCAGGTTCCGGGTGATTTTGCGATtctTCTTCTTCAAGAGGCCTTCGGGGACTGACGGAACTTTCTTCTCCTTcgtctctttcttctccttcgCCGCCTCTTTCGtctccttcttctctctgtaaacaaacacagacGCAACGTCAGGACAAAACGCTACGACTTTCTGAAGACCACGACTCGTACAAAAAAAAGTTCGACTCAGCAGTCGAGTGTCTCATCAGTGAGATGAAATTCttgaacataaaacataaaagtaaCTGTTTATAGcgttaattataattaaacatctttattgcaccattttaatttaacatacaTTTGAGTTTATTCTATAACTGCATActtattttattcatctttatccttgtgcatttcattacattCAATTTTAACATTcacactattttaTTTGTGActctaaaacactttttaacacCTTTTATAGCAGATTAACAATAGATTAAGCAACTTAATTGGTGTTAActcataaaaataaacttttcagGACAGAATTAAAGGAATTTTATGATCAAGCTGCAAAAATTCCACATGCAATGTGACAAGACATGAAGCAGAACATTCAGATGGGAATGTTTATTGCTAAATTTGGTTATTTTTCCCTTTCCAGTGACTGCAAACAAACACTAatgaagcaaaataaataataataactaataaaatgGTGACCATCATGAGACTAACACAGGTAACGCTAGTGCTTAGCATCCAGCTAACACAGGTGTAGTGTCCTGATAAACACACCACTGTAGAACATGAGGTATTACTGTAACATTAATTTAGCTCAAAATTTATTCTGTatgattgttttattgtaaaaataaatgcttttattcaGTTAAACTCTCTCACTAGCTACAGGCCAGTTAACATCACGTTGCTAATGCTACACTGATCCAGGCACTACCATCTTTAACATcaacttttatacactttatactcATTATCCGTCACTAATATCGACTTTAGAACACACATAAGTGTTTAAACATTATTCTCCATCTGAGATTGACAGCGAACAGACACCACAGACGCCGATGGAAGAAGATTTAAACGACAAGACAGTCGACTTACGTTTCACCCGCCATTATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU370234 lncRNA upstream 39641 821262 ~ 822746 (+) True G312517
TU369915 lncRNA upstream 103059 715639 ~ 759328 (+) True G312277
TU369922 lncRNA upstream 119258 739463 ~ 743129 (+) True G312283
TU369914 lncRNA upstream 145096 714021 ~ 717291 (+) False LOC113543349
TU369918 lncRNA upstream 150090 711494 ~ 712297 (+) True G312280
TU370250 lncRNA downstream 8942 875663 ~ 875880 (+) True G312531
TU370257 lncRNA downstream 16683 883404 ~ 886114 (+) True G312534
TU370266 lncRNA downstream 39513 906234 ~ 906446 (+) True G312540
XR_004580327.1 lncRNA downstream 109900 976621 ~ 980051 (+) True LOC117599981
XR_004580295.1 lncRNA downstream 223137 1089858 ~ 1104324 (+) True LOC117599954
XM_026941377.2 mRNA upstream 15370 820530 ~ 847017 (+) True jph1b
XM_026941295.2 mRNA upstream 134522 723451 ~ 727865 (+) True cbln2a
XM_034297687.1 mRNA upstream 145109 704778 ~ 717278 (+) True LOC113543349
XM_026941468.2 mRNA upstream 168049 683806 ~ 694338 (+) True LOC113543348
XM_034314815.1 mRNA upstream 184605 616751 ~ 677782 (+) False mre11a
XM_026941381.2 mRNA downstream 2000 868721 ~ 873766 (+) True rdh10b
XM_026940929.2 mRNA downstream 31337 898058 ~ 901624 (+) True tmem70
XM_034314625.1 mRNA downstream 31497 898218 ~ 901624 (+) False tmem70
XM_026941207.2 mRNA downstream 80071 946792 ~ 965617 (+) True trpa1a
XM_026940965.2 mRNA downstream 137188 1003909 ~ 1012192 (+) True shhb
TU370232 other upstream 23865 820555 ~ 838522 (+) False jph1b
XR_004576918.1 other upstream 549659 275159 ~ 312728 (+) False snap91a
TU369780 other upstream 669153 189539 ~ 193234 (+) True pnrc2
TU369781 other upstream 669153 189539 ~ 193234 (+) False pnrc2
TU369797 other upstream 686846 174238 ~ 175541 (+) True G312191
TU370320 other downstream 262204 1128925 ~ 1131683 (+) False paxip1
TU370328 other downstream 265162 1131883 ~ 1136020 (+) False paxip1
XR_003404390.2 other downstream 1099019 1965740 ~ 1977309 (+) True c21h5orf22
XR_003404395.2 other downstream 1266493 2133214 ~ 2143313 (+) False tgs1
TU370902 other downstream 1315258 2181979 ~ 2185677 (+) True G313112

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU34682 False 1160 lncRNA 0.45 5 CI01000004 10732810 ~ 10736123 (+)
mexican tetra (Astyanax mexicanus) TU34682 False 344 lncRNA 0.38 2 NC_035899.1 43259620 ~ 43262099 (+)