G324563


Basic Information

Item Value
gene id G324563
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 695222 ~ 701258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384593
AACAAAGCTGCTTTCATTCTCACGCGGTGTTCAGACGTGCAGGGTGGATGCGAGCGTTCGGAATCTCACAGGCCTTTTTGtcctttattcctttttttccactttgagCATAATCATCCACACTGATGGCGTCGAGTTCGACTTgtcacttttcttttctgtctaaAGGACTACTTTTTTTatactttcattcttttttatgagaactgctgctcacttttttcttttaccgtTTGAGTCTTCAAAAGAAATAATTTCTGTTCatctgagaaaataaaaagactctaaacataaacatggaacacaacagcaaaaccaataggaaaagcagaaggaagAGCGCGACACAGAGAACAGCCTGAAACAGTGACGCTGGTGGTTATGGTTCAGCTGTGTGGTCTGTGATCTGCAGATGTGCAGTGTGGACCTGGAAAAAGTTCAGCAAATTATTCATGCATCGAGGTGATGATGTTAAACTGTCGGTGGAGGAGACTGAACCAGTACAGCTCCAGAGCTCAGTGCGTCCGTTCTTCTCCGACTGAGGCTCATAAAACAGAGACTGAACAAGAGACACTTTACTTTCAACATACGGTGCTGCTATAACTTTAGAGTATTAAAGGCTCAAACCCTGGACGCCTGACTCAATTTGTTTTAAACTGTCTAAAAATGCCCTAAATATTTCCATGGTTTAATCACGACAAACCCTTATGAGGGAATATCAGAATTAGCTGATATCTCAGAACAACAGTGTGAAACGATCAAATGAATTCATTGAGTTGCTCCTCTCCCCGTGCtgctttctgtcagcttgacaACTCAGAAGgaaaagttttgttttataatgacCAAGTCAGAGTCCAGTCTTAAGCTATTCTAGACCTGAAAAGCACTGTTCATGCAGCTGACCCTCAGCCTAGTGCTCTAAAACGAATGGTCTAAAGTTCCTCCTCACTCTGCAAGTCCTATCAGCAGCTACAGGACACCACTGACATCAACTCATCAACTGATTTTCTCAGTCATGCAGGGCTGTGAATTATTAATCAAAGACTTCAATTAAGACCTCTTTGTGATATTAGTTTAAACAAGACGAGTGTTTTATTACGATTTTCACTTGAATGAAGATACATTTCCGAAATATTTTGACCTTTGGAATCCAGGTGCTTCTGTCAAAAAAACAAGGTCCATTTGCAGAGTTTAGTGTTAACGGAGAACTTGAATGGACTGCACAGAGCCAATACTGGGCAGCTAGTCAGGCTTTATTACCCATCATCAGTGGCTATGCAGTTTAATATTCCACCAATAATCCAACTGATAGCTGAATAGAAAACATCCACGTGTACACCTCCGTTAGAATAAAGTAAACCAACTGAGGCCAGAGACATGTCTGTCCAGCTGAATGAGGTGTGTTAATGTCCTTTTAACAAgcctttaaataaaag
>TU384594
AACAAAGCTGCTTTCATTCTCACGCGGTGTTCAGACGTGCAGGGTGGATGCGAGCGTTCGGAATCTCACAGGCCTTTTTGtcctttattcctttttttccactttgagCATAATCATCCACACTGATGGCGTCGAGTTCGACTTgtcacttttcttttctgtctaaAGGACTACTTTTTTTatactttcattcttttttatgagaactgctgctcacttttttcttttaccgtTTGAGTCTTCAAAAGAAATAATTTCTGTTCatctgagaaaataaaaagactctaaacataaacatggaacacaacagcaaaaccaataggaaaagcagaaggaagAGCGCGACACAGAGAACAGCCTGAAACAGTGACGCTGGTGGTTATGGTTCAGCTGTGTGGTCTGTGATCTGCAGATGTGCAGTGTGGGCCTGGAAAAAGTTCAGCAAATTATTCATGCGTCGAGggtcgcaggctACATCAAACTACAACGCATGgctttggactgagggaggaaacccgAGGACCTGGAGGAGCCCCTCGAatcacggggagaacatgcagactcCGAGCACAGAGAGCGGAGATGACGATGTGAAAACTTCAGTTGAGGAAACTGGATCCAGCTCGGTGCGTCCGTTCTGAGGTCCAGTGCAGCGTTCGTGCATTTGTGGCTGGTCAGTTTAGAAAGATGGACAAGAAGAGAAGTTTTCGAAGCCAGTCACAGCTTTGCAGTATTATATGGGTTGAAATAAAGACTGAATAAAATGCATGTTGTGGACGTTACTTCACTTTAATTCTTAAGTTCATCGTTACAGTAAACTATAAATACtgttattttatagtgttaaaaacagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384593 True 1439 lncRNA 0.41 3 698572 701258
TU384594 False 855 lncRNA 0.43 4 695222 701258

Neighbor

gene id symbol gene type direction distance location
si:ch211-225p5.8 LOC108256244 coding downstream 24387 664062 ~ 670835 (-)
fli1rs LOC108256249,LOC108437389 coding downstream 53715 613922 ~ 641507 (-)
fbl fbl,LOC107737817,LOC107686016,LOC107666874,LOC107719117 coding downstream 83102 606087 ~ 612120 (-)
alkbh8 alkbh8 coding downstream 90207 598396 ~ 605015 (-)
LOC113524795 NA coding downstream 151189 538195 ~ 544033 (-)
scn1ba LOC108256230,LOC108437383 coding upstream 51384 752642 ~ 770973 (-)
mtdhb LOC108256290 coding upstream 119364 820622 ~ 831921 (-)
ubxn11 ubxn11 coding upstream 146577 847835 ~ 856733 (-)
LOC113525074 NA coding upstream 196068 897326 ~ 902262 (-)
si:dkey-11p23.7 siglec15 coding upstream 214661 915919 ~ 919909 (-)
G324562 NA non-coding downstream 13741 680848 ~ 681481 (-)
LOC117595770 NA non-coding downstream 37104 657322 ~ 658118 (-)
G324549 NA non-coding downstream 59117 635704 ~ 636105 (-)
G324545 NA non-coding downstream 111665 582892 ~ 583557 (-)
G324544 NA non-coding downstream 125071 569589 ~ 570151 (-)
LOC113524788 NA non-coding upstream 8614 709872 ~ 712363 (-)
G324571 NA non-coding upstream 12071 713329 ~ 713785 (-)
G324581 NA non-coding upstream 26553 727811 ~ 748501 (-)
G324589 NA non-coding upstream 42289 743547 ~ 783093 (-)
G324580 NA non-coding upstream 45761 747019 ~ 747564 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 119951 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 240399 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 298649 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 363461 234506 ~ 331761 (-)
LOC113523705 LOC108261200 other downstream 483753 199459 ~ 211469 (-)
G324579 NA other upstream 25369 726627 ~ 727634 (-)
nek11 LOC108256279 other upstream 342055 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 593607 1294865 ~ 1342071 (-)
G324748 NA other upstream 669218 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 702006 1403264 ~ 1451000 (-)

Expression


Co-expression Network